From 9f1a3dc1d48edd50ff15ed603ac67e56b91d7e5b Mon Sep 17 00:00:00 2001 From: Jan Eglinger Date: Sun, 15 Nov 2020 15:38:14 +0100 Subject: [PATCH] Add LICENSE.txt and license headers --- LICENSE.txt | 165 ++++++++++++++++++ .../java/ch/fmi/AffineModelConcatenator.java | 21 +++ src/main/java/ch/fmi/AffineModelInverter.java | 21 +++ .../java/ch/fmi/AnisotropicDistanceMap.java | 21 +++ .../java/ch/fmi/ApplyAffineTransform.java | 21 +++ .../ch/fmi/ApplyAffineTransformPoints.java | 21 +++ src/main/java/ch/fmi/ContourPolygon.java | 21 +++ src/main/java/ch/fmi/EllipseFitter.java | 21 +++ .../java/ch/fmi/GenerateAffineMatrix.java | 21 +++ src/main/java/ch/fmi/ImageTranslator2D.java | 21 +++ src/main/java/ch/fmi/MaskStraightener.java | 21 +++ src/main/java/ch/fmi/MeasureAberration.java | 21 +++ src/main/java/ch/fmi/ModelFitter.java | 21 +++ .../java/ch/fmi/MorphoLibJSegmentation.java | 21 +++ src/main/java/ch/fmi/PixelLabeler.java | 21 +++ .../ch/fmi/PointCloudSeriesRegistration.java | 21 +++ src/main/java/ch/fmi/SpotImageGenerator.java | 21 +++ src/main/java/ch/fmi/TrackLabeler.java | 21 +++ .../ch/fmi/TrackMateCollectionTracker.java | 21 +++ .../java/ch/fmi/TrackMateSpotDetector.java | 21 +++ src/main/java/ch/fmi/TrackMateWrapper.java | 21 +++ .../ch/fmi/TrackMateWrapperMultiChannel.java | 21 +++ .../java/org/doube/geometry/Centroid.java | 21 +++ .../java/org/doube/geometry/FitEllipse.java | 21 +++ .../java/ch/fmi/AffineModelInverterTest.java | 21 +++ .../fmi/ApplyAffineTransformPointsTest.java | 21 +++ src/test/java/ch/fmi/ModelFitterTest.java | 21 +++ .../fmi/PointCloudSeriesRegistrationTest.java | 21 +++ 28 files changed, 732 insertions(+) create mode 100644 LICENSE.txt diff --git a/LICENSE.txt b/LICENSE.txt new file mode 100644 index 0000000..cca7fc2 --- /dev/null +++ b/LICENSE.txt @@ -0,0 +1,165 @@ + GNU LESSER GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + + This version of the GNU Lesser General Public License incorporates +the terms and conditions of version 3 of the GNU General Public +License, supplemented by the additional permissions listed below. + + 0. Additional Definitions. + + As used herein, "this License" refers to version 3 of the GNU Lesser +General Public License, and the "GNU GPL" refers to version 3 of the GNU +General Public License. + + "The Library" refers to a covered work governed by this License, +other than an Application or a Combined Work as defined below. + + An "Application" is any work that makes use of an interface provided +by the Library, but which is not otherwise based on the Library. +Defining a subclass of a class defined by the Library is deemed a mode +of using an interface provided by the Library. + + A "Combined Work" is a work produced by combining or linking an +Application with the Library. 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Combined Libraries. + + You may place library facilities that are a work based on the +Library side by side in a single library together with other library +facilities that are not Applications and are not covered by this +License, and convey such a combined library under terms of your +choice, if you do both of the following: + + a) Accompany the combined library with a copy of the same work based + on the Library, uncombined with any other library facilities, + conveyed under the terms of this License. + + b) Give prominent notice with the combined library that part of it + is a work based on the Library, and explaining where to find the + accompanying uncombined form of the same work. + + 6. Revised Versions of the GNU Lesser General Public License. + + The Free Software Foundation may publish revised and/or new versions +of the GNU Lesser General Public License from time to time. Such new +versions will be similar in spirit to the present version, but may +differ in detail to address new problems or concerns. + + Each version is given a distinguishing version number. If the +Library as you received it specifies that a certain numbered version +of the GNU Lesser General Public License "or any later version" +applies to it, you have the option of following the terms and +conditions either of that published version or of any later version +published by the Free Software Foundation. If the Library as you +received it does not specify a version number of the GNU Lesser +General Public License, you may choose any version of the GNU Lesser +General Public License ever published by the Free Software Foundation. + + If the Library as you received it specifies that a proxy can decide +whether future versions of the GNU Lesser General Public License shall +apply, that proxy's public statement of acceptance of any version is +permanent authorization for you to choose that version for the +Library. diff --git a/src/main/java/ch/fmi/AffineModelConcatenator.java b/src/main/java/ch/fmi/AffineModelConcatenator.java index 210fab4..4ad135f 100644 --- a/src/main/java/ch/fmi/AffineModelConcatenator.java +++ b/src/main/java/ch/fmi/AffineModelConcatenator.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; diff --git a/src/main/java/ch/fmi/AffineModelInverter.java b/src/main/java/ch/fmi/AffineModelInverter.java index d560cb1..1c8f06a 100644 --- a/src/main/java/ch/fmi/AffineModelInverter.java +++ b/src/main/java/ch/fmi/AffineModelInverter.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import org.scijava.ItemIO; diff --git a/src/main/java/ch/fmi/AnisotropicDistanceMap.java b/src/main/java/ch/fmi/AnisotropicDistanceMap.java index 80eb7c7..b228596 100644 --- a/src/main/java/ch/fmi/AnisotropicDistanceMap.java +++ b/src/main/java/ch/fmi/AnisotropicDistanceMap.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import java.util.stream.IntStream; diff --git a/src/main/java/ch/fmi/ApplyAffineTransform.java b/src/main/java/ch/fmi/ApplyAffineTransform.java index 6809753..31ef84b 100644 --- a/src/main/java/ch/fmi/ApplyAffineTransform.java +++ b/src/main/java/ch/fmi/ApplyAffineTransform.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import net.imglib2.Cursor; diff --git a/src/main/java/ch/fmi/ApplyAffineTransformPoints.java b/src/main/java/ch/fmi/ApplyAffineTransformPoints.java index b236869..e553b76 100644 --- a/src/main/java/ch/fmi/ApplyAffineTransformPoints.java +++ b/src/main/java/ch/fmi/ApplyAffineTransformPoints.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/ContourPolygon.java b/src/main/java/ch/fmi/ContourPolygon.java index e3740dc..c7c7148 100644 --- a/src/main/java/ch/fmi/ContourPolygon.java +++ b/src/main/java/ch/fmi/ContourPolygon.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import net.imagej.ops.OpService; diff --git a/src/main/java/ch/fmi/EllipseFitter.java b/src/main/java/ch/fmi/EllipseFitter.java index 3e25d4e..4ae1fbd 100644 --- a/src/main/java/ch/fmi/EllipseFitter.java +++ b/src/main/java/ch/fmi/EllipseFitter.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import java.util.ArrayList; diff --git a/src/main/java/ch/fmi/GenerateAffineMatrix.java b/src/main/java/ch/fmi/GenerateAffineMatrix.java index 2b7a579..3f94133 100644 --- a/src/main/java/ch/fmi/GenerateAffineMatrix.java +++ b/src/main/java/ch/fmi/GenerateAffineMatrix.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import org.scijava.ItemIO; diff --git a/src/main/java/ch/fmi/ImageTranslator2D.java b/src/main/java/ch/fmi/ImageTranslator2D.java index b46bddf..99273a1 100644 --- a/src/main/java/ch/fmi/ImageTranslator2D.java +++ b/src/main/java/ch/fmi/ImageTranslator2D.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import net.imglib2.Cursor; diff --git a/src/main/java/ch/fmi/MaskStraightener.java b/src/main/java/ch/fmi/MaskStraightener.java index 48377c4..3a7133f 100644 --- a/src/main/java/ch/fmi/MaskStraightener.java +++ b/src/main/java/ch/fmi/MaskStraightener.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import java.awt.Polygon; diff --git a/src/main/java/ch/fmi/MeasureAberration.java b/src/main/java/ch/fmi/MeasureAberration.java index 1976db0..0563dcd 100644 --- a/src/main/java/ch/fmi/MeasureAberration.java +++ b/src/main/java/ch/fmi/MeasureAberration.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/ModelFitter.java b/src/main/java/ch/fmi/ModelFitter.java index 285ecc4..2672675 100644 --- a/src/main/java/ch/fmi/ModelFitter.java +++ b/src/main/java/ch/fmi/ModelFitter.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; diff --git a/src/main/java/ch/fmi/MorphoLibJSegmentation.java b/src/main/java/ch/fmi/MorphoLibJSegmentation.java index 40610db..291eaad 100644 --- a/src/main/java/ch/fmi/MorphoLibJSegmentation.java +++ b/src/main/java/ch/fmi/MorphoLibJSegmentation.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; diff --git a/src/main/java/ch/fmi/PixelLabeler.java b/src/main/java/ch/fmi/PixelLabeler.java index 4ce7b51..bd2ee47 100644 --- a/src/main/java/ch/fmi/PixelLabeler.java +++ b/src/main/java/ch/fmi/PixelLabeler.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import net.imagej.ops.OpService; diff --git a/src/main/java/ch/fmi/PointCloudSeriesRegistration.java b/src/main/java/ch/fmi/PointCloudSeriesRegistration.java index f4f7b58..22b665e 100644 --- a/src/main/java/ch/fmi/PointCloudSeriesRegistration.java +++ b/src/main/java/ch/fmi/PointCloudSeriesRegistration.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/SpotImageGenerator.java b/src/main/java/ch/fmi/SpotImageGenerator.java index 00dbdca..43cf8d9 100644 --- a/src/main/java/ch/fmi/SpotImageGenerator.java +++ b/src/main/java/ch/fmi/SpotImageGenerator.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import java.util.Random; diff --git a/src/main/java/ch/fmi/TrackLabeler.java b/src/main/java/ch/fmi/TrackLabeler.java index 2eed1fa..5d049c8 100644 --- a/src/main/java/ch/fmi/TrackLabeler.java +++ b/src/main/java/ch/fmi/TrackLabeler.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import net.imagej.ImgPlus; diff --git a/src/main/java/ch/fmi/TrackMateCollectionTracker.java b/src/main/java/ch/fmi/TrackMateCollectionTracker.java index 507d5b1..74ec28a 100644 --- a/src/main/java/ch/fmi/TrackMateCollectionTracker.java +++ b/src/main/java/ch/fmi/TrackMateCollectionTracker.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/TrackMateSpotDetector.java b/src/main/java/ch/fmi/TrackMateSpotDetector.java index d509294..0956e6b 100644 --- a/src/main/java/ch/fmi/TrackMateSpotDetector.java +++ b/src/main/java/ch/fmi/TrackMateSpotDetector.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/TrackMateWrapper.java b/src/main/java/ch/fmi/TrackMateWrapper.java index f58b181..ede2953 100644 --- a/src/main/java/ch/fmi/TrackMateWrapper.java +++ b/src/main/java/ch/fmi/TrackMateWrapper.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/ch/fmi/TrackMateWrapperMultiChannel.java b/src/main/java/ch/fmi/TrackMateWrapperMultiChannel.java index 5acc76b..d57547c 100644 --- a/src/main/java/ch/fmi/TrackMateWrapperMultiChannel.java +++ b/src/main/java/ch/fmi/TrackMateWrapperMultiChannel.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import com.google.common.primitives.Doubles; diff --git a/src/main/java/org/doube/geometry/Centroid.java b/src/main/java/org/doube/geometry/Centroid.java index 4e923e5..29edd35 100644 --- a/src/main/java/org/doube/geometry/Centroid.java +++ b/src/main/java/org/doube/geometry/Centroid.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package org.doube.geometry; public class Centroid { diff --git a/src/main/java/org/doube/geometry/FitEllipse.java b/src/main/java/org/doube/geometry/FitEllipse.java index 569b892..5ffb93c 100644 --- a/src/main/java/org/doube/geometry/FitEllipse.java +++ b/src/main/java/org/doube/geometry/FitEllipse.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package org.doube.geometry; /** diff --git a/src/test/java/ch/fmi/AffineModelInverterTest.java b/src/test/java/ch/fmi/AffineModelInverterTest.java index 5bf418f..cc1f30c 100644 --- a/src/test/java/ch/fmi/AffineModelInverterTest.java +++ b/src/test/java/ch/fmi/AffineModelInverterTest.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; diff --git a/src/test/java/ch/fmi/ApplyAffineTransformPointsTest.java b/src/test/java/ch/fmi/ApplyAffineTransformPointsTest.java index d4f0d2a..9debc5f 100644 --- a/src/test/java/ch/fmi/ApplyAffineTransformPointsTest.java +++ b/src/test/java/ch/fmi/ApplyAffineTransformPointsTest.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; import static org.junit.Assert.*; diff --git a/src/test/java/ch/fmi/ModelFitterTest.java b/src/test/java/ch/fmi/ModelFitterTest.java index 671d19d..ad31129 100644 --- a/src/test/java/ch/fmi/ModelFitterTest.java +++ b/src/test/java/ch/fmi/ModelFitterTest.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi; diff --git a/src/test/java/ch/fmi/PointCloudSeriesRegistrationTest.java b/src/test/java/ch/fmi/PointCloudSeriesRegistrationTest.java index b80afed..e991b83 100644 --- a/src/test/java/ch/fmi/PointCloudSeriesRegistrationTest.java +++ b/src/test/java/ch/fmi/PointCloudSeriesRegistrationTest.java @@ -1,3 +1,24 @@ +/*- + * #%L + * A collection of plugins developed at the FMI Basel. + * %% + * Copyright (C) 2016 - 2020 FMI Basel + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Lesser General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Lesser Public License for more details. + * + * You should have received a copy of the GNU General Lesser Public + * License along with this program. If not, see + * . + * #L% + */ package ch.fmi;