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Memory exceeded with a big number of reads #4

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netbofia opened this issue Oct 11, 2018 · 0 comments
Open

Memory exceeded with a big number of reads #4

netbofia opened this issue Oct 11, 2018 · 0 comments
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Finding sequences in a file can take to much time with grep.

Implement --> grep -wf $novelSeq $noncons > $novelTmp in python with hash maps or dictionaries
@netbofia netbofia added the bug label Oct 11, 2018
netbofia added a commit that referenced this issue Oct 12, 2018
@netbofia
Fixes #4 - This fix reduces the time used from a memory blowout in 7 …
c2b9e94 
…hours to a 2 second run.
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