From 9033088e9fc649f5d58e0155453ea1713ffbbf3b Mon Sep 17 00:00:00 2001 From: diogom Date: Fri, 11 Oct 2024 19:10:01 -0700 Subject: [PATCH] improve help msg for mk_prepare_receptor --write flags --- scripts/mk_prepare_receptor.py | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/scripts/mk_prepare_receptor.py b/scripts/mk_prepare_receptor.py index bb442cc9..5b8a2dee 100755 --- a/scripts/mk_prepare_receptor.py +++ b/scripts/mk_prepare_receptor.py @@ -935,9 +935,16 @@ def warn_flexres_outside_box(chorizo, box_center, box_size): print(line % (fn, desc)) else: print() - print("You have successfully prepared the receptor, but no files were written.") - print("Likely, you want to use some of the --write options, for example:") - print(" -p/--write_pdbqt, -j/--write_json, -g/--write_gpf, -v/--write_vina_box") + print() + print("Receptor was prepared, but no files were written.") + print("") + print("Consider the following --write options:") + print(" -p/--write_pdbqt") + print(" -j/--write_json") + print(" -g/--write_gpf") + print(" -v/--write_vina_box") + print("") + print("Use -o/--output_basename, or set a filename after each --write flag") print("") print("Recommended for AutoDock-GPU:") print(" -o my_receptor -p -j -g")