Python exception error with running example data

[danieljrichard]

Hello,
I was trying to run this software with just the basic data included in /example
However, I'm getting the following rather opaque error message - might anyone have any suggestions on how to fix this?

python3 /extra/APPENDICULAR_HEIGHT_PAPER_2021/VARIANT_CALL/fastqtl/python/run_FastQTL_threaded.py genotypes.vcf.gz phenotypes.bed.gz TEST_EXAMPLE --covariates covariates.txt.gz --window 1e6 --ma_sample_threshold 10 --maf_threshold 0.01 --chunks 100 --threads 1 -o test
[Mar 05 19:50:26] Running FastQTL on 1 threads.
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multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/usr/lib/python3.10/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/usr/lib/python3.10/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
File "/extra/APPENDICULAR_HEIGHT_PAPER_2021/VARIANT_CALL/fastqtl/python/run_FastQTL_threaded.py", line 54, in perm_worker
s = subprocess.check_call(cmd, shell=True, executable='/bin/bash', stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL)
File "/usr/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '/extra/APPENDICULAR_HEIGHT_PAPER_2021/VARIANT_CALL/fastqtl/bin/fastQTL --vcf genotypes.vcf.gz --bed phenotypes.bed.gz --window 1e6 --maf-threshold 0.01 --ma-sample-threshold 10 --interaction-maf-threshold 0 --cov covariates.txt.gz --chunk 1 100 --out TEST_EXAMPLE_chunk001.txt.gz --log TEST_EXAMPLE_chunk001.log' returned non-zero exit status 127.
"""

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "/extra/APPENDICULAR_HEIGHT_PAPER_2021/VARIANT_CALL/fastqtl/python/run_FastQTL_threaded.py", line 95, in
assert res.get()[0]==0
File "/usr/lib/python3.10/multiprocessing/pool.py", line 774, in get
raise self._value
subprocess.CalledProcessError: Command '/extra/APPENDICULAR_HEIGHT_PAPER_2021/VARIANT_CALL/fastqtl/bin/fastQTL --vcf genotypes.vcf.gz --bed phenotypes.bed.gz --window 1e6 --maf-threshold 0.01 --ma-sample-threshold 10 --interaction-maf-threshold 0 --cov covariates.txt.gz --chunk 1 100 --out TEST_EXAMPLE_chunk001.txt.gz --log TEST_EXAMPLE_chunk001.log' returned non-zero exit status 127.