.travis.yml

language: python
os: linux

python:
  - 2.7
  - 3.7

# command to install dependencies, e.g. pip install -r requirements.txt --use-mirrors

install:
    # We do this conditionally because it saves us some downloading if the
    # version is the same.
    - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
      wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
      else
      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
      fi
    - bash miniconda.sh -b -p $HOME/miniconda
    - export PATH="$HOME/miniconda/bin:$PATH"
    - hash -r
    - conda config --set always_yes yes --set changeps1 no
    - conda update -q conda
    # Useful for debugging any issues with conda
    - conda info -a
    
    # Replace dep1 dep2 ... with your dependencies
    - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION pip numpy matplotlib scipy
    - source activate test-environment
    - conda config --add channels salilab && conda config --add channels bioconda
    - conda config --add channels hargup/label/pypi && conda config --add channels conda-forge
    - conda install -y -q imp
    - conda install -y -q -c bioconda mcl  # somehow channel needed?
    - conda install -y -q future
    - conda install -y -q h5py
    - conda install -y -q samtools
    - conda install -y -q pysam
    - yes | python setup.py install
    - pip install coveralls

before_script:
    - python --version
    - export COVERALLS_SERVICE_NAME=travis-ci
    - export COVERALLS_REPO_TOKEN=abc12345

# command to run tests, e.g. python setup.py test
script:
    - cd test; coverage run --source=pytadbit test_all.py

after_success:
    - export COVERALLS_SERVICE_NAME=travis-ci
    - export COVERALLS_REPO_TOKEN=abc12345
    - coveralls

branches:
  only:
      - master

#The email defaults are too talkative while we're getting Travis working nicely.
notifications:
  email: false