update test vcf file to have contig headers and info annotations

gagneurlab · Sep 6, 2020 · f65908d · f65908d
1 parent d7237e8
commit f65908d
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diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -55,7 +55,7 @@ variables:
       command: |
         gzip -dk tests/data/test.vcf.gz
         cat tests/data/test.vcf | docker run -i mmsplice vep --plugin MMSplice --format vcf --assembly GRCh37 --database --port 3337 --vcf -o STDOUT | tee log_variant_effect_output.txt
-        sed -n '/##fileformat=VCFv4.0/,$p' log_variant_effect_output.txt > variant_effect_output.txt
+        sed -n '/##fileformat=VCFv4.*/,$p' log_variant_effect_output.txt > variant_effect_output.txt
   test_docker: &test_docker
     run:
       name: Test vep plugin in docker

diff --git a/tests/data/test.vcf.gz b/tests/data/test.vcf.gz
diff --git a/tests/data/test.vcf.gz.tbi b/tests/data/test.vcf.gz.tbi