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Update deeparg : remove suite information into DM .shed.yaml #6725

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hugolefeuvre
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@hugolefeuvre hugolefeuvre commented Feb 6, 2025

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

Error from deploy :

+ planemo shed_update --shed_target toolshed --shed_key *** --force_repository_creation data_managers/data_manager_deeparg
cd '/home/runner/work/tools-iuc/tools-iuc/data_managers/data_manager_deeparg' && git rev-parse HEAD
galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
git diff --quiet
Could not update suite_deeparg
Failed to find repository for owner/name iuc/suite_deeparg
Could not update suite_deeparg
Unexpected HTTP status code: 500: {"err_msg": "Revision <b>92aff5b00830<\/b> includes no Galaxy utilities for which metadata can be defined so this revision cannot be automatically installed into a local Galaxy instance."}
Repository metadata updated successfully for repository 'suite_deeparg' on the main Tool Shed.
Failed to update repository contents for repository 'suite_deeparg' on the main Tool Shed.

So I removed suite information into DM .shed.yaml

@bgruening
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Thanks @hugolefeuvre but that should not be needed, we need to figure out why this is failing in the first place.

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