Jamroot

project profillic
    : requirements <library>/HMMoC-BFloat-Algebra//libHMMoC-BFloat-Algebra
    : requirements <warnings>off ;

use-project /HMMoC-BFloat-Algebra : ./HMMoC-BFloat-Algebra ;



exe profillic_AA_CBW
    : [ obj Train_obj : Train.cpp
        : <include>./prolific <include>./boost-include <include>./seqan-trunk/include <define>__PROFUSE_USE_AMINOS ] boost_serialization boost_system boost_graph boost_program_options : ;

exe profillic_AA_CQA
    : [ obj Train_obj : Train.cpp
        : <include>./prolific <include>./boost-include <include>./seqan-trunk/include <define>__PROFUSE_USE_AMINOS <define>ALLOW_BOLTZMANN_GIBBS ] boost_serialization boost_system boost_graph boost_program_options : ;

alias profillic_AA : profillic_AA_CBW profillic_AA_CQA ;

exe profillic_DNA_CBW
    : [ obj Train_obj : Train.cpp
        : <include>./prolific <include>./boost-include <include>./seqan-trunk/include ] boost_serialization boost_system boost_graph boost_program_options : ;

exe profillic_DNA_CQA
    : [ obj Train_obj : Train.cpp
        : <include>./prolific <include>./boost-include <include>./seqan-trunk/include <define>ALLOW_BOLTZMANN_GIBBS ] boost_serialization boost_system boost_graph boost_program_options : ;

alias profillic_DNA : profillic_DNA_CBW profillic_DNA_CQA ;

alias profillic : profillic_AA profillic_DNA ;

alias progs : profillic ;

install dist : progs : <location>dist ;

alias install : dist ;

explicit install dist ;


## If you are on a multithreaded system, see below
# lib boost_serialization : : <file>./boost-lib/libboost_serialization.a ;
# lib boost_filesystem : : <file>./boost-lib/libboost_filesystem.a ;
# lib boost_graph : : <file>./boost-lib/libboost_graph.a ;
# lib boost_system : : <file>./boost-lib/libboost_system.a ;
# lib boost_program_options : : <file>./boost-lib/libboost_program_options.a ;

## If you are on a multithreaded system, comment out the above and uncomment this:
lib boost_serialization : : <file>./boost-lib/libboost_serialization-mt.dylib ;
lib boost_filesystem : : <file>./boost-lib/libboost_filesystem-mt.dylib ;
lib boost_graph : : <file>./boost-lib/libboost_graph-mt.dylib ;
lib boost_system : : <file>./boost-lib/libboost_system-mt.dylib ;
lib boost_program_options : : <file>./boost-lib/libboost_program_options-mt.dylib ;