From 2750ebb4620cd83f218fceb7cc819269ce6d1e9d Mon Sep 17 00:00:00 2001 From: gaynorr Date: Tue, 20 Aug 2024 12:07:34 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20gaynorr/?= =?UTF-8?q?AlphaSimR@832c1e4ff69a161b23dd3a5c63d091efbc9ed64e=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/AlphaSimR.html | 2 +- articles/DataImport.html | 2 +- articles/Genome.html | 2 +- articles/GenomicSelection.html | 2 +- articles/Meiosis.html | 2 +- articles/Misc.html | 2 +- articles/QuantGen.html | 2 +- articles/Traits.html | 2 +- articles/intro.html | 2 +- articles/traits.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/AlphaSimR-package.html | 2 +- reference/HybridPop-class.html | 2 +- reference/LociMap-class.html | 2 +- reference/MapPop-class.html | 2 +- reference/MultiPop-class.html | 2 +- reference/NamedMapPop-class.html | 2 +- reference/Pop-class.html | 2 +- reference/RRBLUP.html | 2 +- reference/RRBLUP2.html | 2 +- reference/RRBLUPMemUse.html | 2 +- reference/RRBLUP_D.html | 2 +- reference/RRBLUP_D2.html | 2 +- reference/RRBLUP_GCA.html | 2 +- reference/RRBLUP_GCA2.html | 2 +- reference/RRBLUP_SCA.html | 2 +- reference/RRBLUP_SCA2.html | 2 +- reference/RRsol-class.html | 2 +- reference/RawPop-class.html | 2 +- reference/SimParam.html | 2 +- reference/TraitA-class.html | 2 +- reference/TraitA2-class.html | 2 +- reference/TraitA2D-class.html | 2 +- reference/TraitAD-class.html | 2 +- reference/TraitADE-class.html | 2 +- reference/TraitADEG-class.html | 2 +- reference/TraitADG-class.html | 2 +- reference/TraitAE-class.html | 2 +- reference/TraitAEG-class.html | 2 +- reference/TraitAG-class.html | 2 +- reference/aa.html | 2 +- reference/addSegSite.html | 2 +- reference/attrition.html | 2 +- reference/bv.html | 2 +- reference/cChr.html | 2 +- reference/calcGCA.html | 2 +- reference/dd.html | 2 +- reference/dot-newPop.html | 2 +- reference/doubleGenome.html | 2 +- reference/ebv.html | 2 +- reference/editGenome.html | 2 +- reference/editGenomeTopQtl.html | 2 +- reference/fastRRBLUP.html | 2 +- reference/genParam.html | 2 +- reference/genicVarA.html | 2 +- reference/genicVarAA.html | 2 +- reference/genicVarD.html | 2 +- reference/genicVarG.html | 2 +- reference/getGenMap.html | 2 +- reference/getNumThreads.html | 2 +- reference/getPed.html | 2 +- reference/getQtlMap.html | 2 +- reference/getSnpMap.html | 2 +- reference/gv.html | 2 +- reference/hybridCross.html | 2 +- reference/importGenMap.html | 2 +- reference/importHaplo.html | 2 +- reference/importInbredGeno.html | 2 +- reference/isFemale.html | 2 +- reference/isPop.html | 2 +- reference/makeCross.html | 2 +- reference/makeCross2.html | 2 +- reference/makeDH.html | 2 +- reference/meanEBV.html | 2 +- reference/meanG.html | 2 +- reference/meanP.html | 2 +- reference/mergeGenome.html | 2 +- reference/mergePops.html | 2 +- reference/mutate.html | 2 +- reference/nInd.html | 2 +- reference/newEmptyPop.html | 2 +- reference/newMapPop.html | 2 +- reference/newMultiPop.html | 2 +- reference/newPop.html | 2 +- reference/pedigreeCross.html | 2 +- reference/pheno.html | 2 +- reference/popVar.html | 2 +- reference/pullIbdHaplo.html | 2 +- reference/pullMarkerGeno.html | 2 +- reference/pullMarkerHaplo.html | 2 +- reference/pullQtlGeno.html | 2 +- reference/pullQtlHaplo.html | 2 +- reference/pullSegSiteGeno.html | 2 +- reference/pullSegSiteHaplo.html | 2 +- reference/pullSnpGeno.html | 2 +- reference/pullSnpHaplo.html | 2 +- reference/quickHaplo.html | 2 +- reference/randCross.html | 2 +- reference/randCross2.html | 2 +- reference/reduceGenome.html | 2 +- reference/resetPop.html | 2 +- reference/runMacs.html | 2 +- reference/runMacs2.html | 2 +- reference/sampleHaplo.html | 2 +- reference/selIndex.html | 2 +- reference/selInt.html | 2 +- reference/selectCross.html | 2 +- reference/selectFam.html | 2 +- reference/selectInd.html | 2 +- reference/selectOP.html | 2 +- reference/selectWithinFam.html | 2 +- reference/self.html | 2 +- reference/setEBV.html | 2 +- reference/setMarkerHaplo.html | 2 +- reference/setPheno.html | 2 +- reference/setPhenoGCA.html | 2 +- reference/setPhenoProgTest.html | 2 +- reference/smithHazel.html | 2 +- reference/solveMKM.html | 2 +- reference/solveMVM.html | 2 +- reference/solveRRBLUP.html | 2 +- reference/solveRRBLUPMK.html | 2 +- reference/solveRRBLUPMV.html | 2 +- reference/solveRRBLUP_EM.html | 2 +- reference/solveRRBLUP_EM2.html | 2 +- reference/solveRRBLUP_EM3.html | 2 +- reference/solveUVM.html | 2 +- reference/transMat.html | 2 +- reference/usefulness.html | 2 +- reference/varA.html | 2 +- reference/varAA.html | 2 +- reference/varD.html | 2 +- reference/varEBV.html | 2 +- reference/varG.html | 2 +- reference/varP.html | 2 +- reference/writePlink.html | 2 +- reference/writeRecords.html | 2 +- 139 files changed, 139 insertions(+), 139 deletions(-) diff --git a/articles/AlphaSimR.html b/articles/AlphaSimR.html index cbbbe70f..ef1da033 100644 --- a/articles/AlphaSimR.html +++ b/articles/AlphaSimR.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/AlphaSimR.Rmd + Source: vignettes/articles/AlphaSimR.Rmd
AlphaSimR.Rmd
diff --git a/articles/DataImport.html b/articles/DataImport.html index 3136975c..7579ac68 100644 --- a/articles/DataImport.html +++ b/articles/DataImport.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/DataImport.Rmd + Source: vignettes/articles/DataImport.Rmd
DataImport.Rmd
diff --git a/articles/Genome.html b/articles/Genome.html index 26bcfd7f..bb5ae185 100644 --- a/articles/Genome.html +++ b/articles/Genome.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/Genome.Rmd + Source: vignettes/articles/Genome.Rmd
Genome.Rmd
diff --git a/articles/GenomicSelection.html b/articles/GenomicSelection.html index 04bf88ba..5f248c5a 100644 --- a/articles/GenomicSelection.html +++ b/articles/GenomicSelection.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/GenomicSelection.Rmd + Source: vignettes/articles/GenomicSelection.Rmd
GenomicSelection.Rmd
diff --git a/articles/Meiosis.html b/articles/Meiosis.html index 9bd8c46d..cdf06ecb 100644 --- a/articles/Meiosis.html +++ b/articles/Meiosis.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/Meiosis.Rmd + Source: vignettes/articles/Meiosis.Rmd
Meiosis.Rmd
diff --git a/articles/Misc.html b/articles/Misc.html index e4cde9c8..335642f4 100644 --- a/articles/Misc.html +++ b/articles/Misc.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/Misc.Rmd + Source: vignettes/articles/Misc.Rmd
Misc.Rmd
diff --git a/articles/QuantGen.html b/articles/QuantGen.html index 17c60f36..d4889506 100644 --- a/articles/QuantGen.html +++ b/articles/QuantGen.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/QuantGen.Rmd + Source: vignettes/articles/QuantGen.Rmd
QuantGen.Rmd
diff --git a/articles/Traits.html b/articles/Traits.html index 386c65ee..5ea1141e 100644 --- a/articles/Traits.html +++ b/articles/Traits.html @@ -71,7 +71,7 @@

Vignette

2024-08-20

- Source: vignettes/articles/Traits.Rmd + Source: vignettes/articles/Traits.Rmd
Traits.Rmd
diff --git a/articles/intro.html b/articles/intro.html index 62956a00..ac214c54 100644 --- a/articles/intro.html +++ b/articles/intro.html @@ -71,7 +71,7 @@

Chris

2024-08-20

- Source: vignettes/intro.Rmd + Source: vignettes/intro.Rmd
intro.Rmd
diff --git a/articles/traits.html b/articles/traits.html index dbded958..5a07e929 100644 --- a/articles/traits.html +++ b/articles/traits.html @@ -71,7 +71,7 @@

Chris

2024-08-20

- Source: vignettes/traits.Rmd + Source: vignettes/traits.Rmd
traits.Rmd
diff --git a/authors.html b/authors.html index 2917f928..de762e96 100644 --- a/authors.html +++ b/authors.html @@ -83,7 +83,7 @@

Authors

Citation

-

Source: inst/CITATION

+

Source: inst/CITATION

Gaynor RC, Gorjanc G, Hickey JM (2021). “AlphaSimR: an R package for breeding program simulations.” diff --git a/news/index.html b/news/index.html index bb351adc..5172d018 100644 --- a/news/index.html +++ b/news/index.html @@ -42,7 +42,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 907faae3..8a7c666f 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -12,7 +12,7 @@ articles: articles/QuantGen: QuantGen.html traits: traits.html articles/Traits: Traits.html -last_built: 2024-08-20T12:01Z +last_built: 2024-08-20T12:06Z urls: reference: https://gaynorr.github.io/AlphaSimR/reference article: https://gaynorr.github.io/AlphaSimR/articles diff --git a/reference/AlphaSimR-package.html b/reference/AlphaSimR-package.html index 6b3b841f..bf73f2fb 100644 --- a/reference/AlphaSimR-package.html +++ b/reference/AlphaSimR-package.html @@ -70,7 +70,7 @@

AlphaSimR: Breeding Program Simulations

- Source: R/AlphaSimR.R + Source: R/AlphaSimR.R
AlphaSimR-package.Rd
diff --git a/reference/HybridPop-class.html b/reference/HybridPop-class.html index 183bed5f..fd63e478 100644 --- a/reference/HybridPop-class.html +++ b/reference/HybridPop-class.html @@ -44,7 +44,7 @@

Hybrid population

- Source: R/Class-HybridPop.R + Source: R/Class-HybridPop.R
HybridPop-class.Rd
diff --git a/reference/LociMap-class.html b/reference/LociMap-class.html index 968efbb4..155a9b0c 100644 --- a/reference/LociMap-class.html +++ b/reference/LociMap-class.html @@ -42,7 +42,7 @@

Loci metadata

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
LociMap-class.Rd
diff --git a/reference/MapPop-class.html b/reference/MapPop-class.html index ff51c1a4..37622fe6 100644 --- a/reference/MapPop-class.html +++ b/reference/MapPop-class.html @@ -48,7 +48,7 @@

Raw population with genetic map

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
MapPop-class.Rd
diff --git a/reference/MultiPop-class.html b/reference/MultiPop-class.html index c6106b9d..23000770 100644 --- a/reference/MultiPop-class.html +++ b/reference/MultiPop-class.html @@ -44,7 +44,7 @@

Multi-Population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
MultiPop-class.Rd
diff --git a/reference/NamedMapPop-class.html b/reference/NamedMapPop-class.html index 8cae974c..bc48935b 100644 --- a/reference/NamedMapPop-class.html +++ b/reference/NamedMapPop-class.html @@ -42,7 +42,7 @@

Raw population with genetic map and id

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
NamedMapPop-class.Rd
diff --git a/reference/Pop-class.html b/reference/Pop-class.html index 7961f1f2..0afc59fd 100644 --- a/reference/Pop-class.html +++ b/reference/Pop-class.html @@ -44,7 +44,7 @@

Population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
Pop-class.Rd
diff --git a/reference/RRBLUP.html b/reference/RRBLUP.html index 61e3f081..42b011d4 100644 --- a/reference/RRBLUP.html +++ b/reference/RRBLUP.html @@ -42,7 +42,7 @@

RR-BLUP Model

- Source: R/GS.R + Source: R/GS.R
RRBLUP.Rd
diff --git a/reference/RRBLUP2.html b/reference/RRBLUP2.html index 8559d467..bff4b364 100644 --- a/reference/RRBLUP2.html +++ b/reference/RRBLUP2.html @@ -48,7 +48,7 @@

RR-BLUP Model 2

- Source: R/GS.R + Source: R/GS.R
RRBLUP2.Rd
diff --git a/reference/RRBLUPMemUse.html b/reference/RRBLUPMemUse.html index 85c5cd96..509a9a88 100644 --- a/reference/RRBLUPMemUse.html +++ b/reference/RRBLUPMemUse.html @@ -46,7 +46,7 @@

RRBLUP Memory Usage

- Source: R/GS.R + Source: R/GS.R
RRBLUPMemUse.Rd
diff --git a/reference/RRBLUP_D.html b/reference/RRBLUP_D.html index 095d2c01..7d6341f9 100644 --- a/reference/RRBLUP_D.html +++ b/reference/RRBLUP_D.html @@ -44,7 +44,7 @@

RR-BLUP Model with Dominance

- Source: R/GS.R + Source: R/GS.R
RRBLUP_D.Rd
diff --git a/reference/RRBLUP_D2.html b/reference/RRBLUP_D2.html index 335042b4..14b405b3 100644 --- a/reference/RRBLUP_D2.html +++ b/reference/RRBLUP_D2.html @@ -50,7 +50,7 @@

RR-BLUP with Dominance Model 2

- Source: R/GS.R + Source: R/GS.R
RRBLUP_D2.Rd
diff --git a/reference/RRBLUP_GCA.html b/reference/RRBLUP_GCA.html index d6d35a91..63105e0e 100644 --- a/reference/RRBLUP_GCA.html +++ b/reference/RRBLUP_GCA.html @@ -48,7 +48,7 @@

RR-BLUP GCA Model

- Source: R/GS.R + Source: R/GS.R
RRBLUP_GCA.Rd
diff --git a/reference/RRBLUP_GCA2.html b/reference/RRBLUP_GCA2.html index e1eaba3c..1c0a8b64 100644 --- a/reference/RRBLUP_GCA2.html +++ b/reference/RRBLUP_GCA2.html @@ -50,7 +50,7 @@

RR-BLUP GCA Model 2

- Source: R/GS.R + Source: R/GS.R
RRBLUP_GCA2.Rd
diff --git a/reference/RRBLUP_SCA.html b/reference/RRBLUP_SCA.html index c0b3c38c..d5c80f8b 100644 --- a/reference/RRBLUP_SCA.html +++ b/reference/RRBLUP_SCA.html @@ -46,7 +46,7 @@

RR-BLUP SCA Model

- Source: R/GS.R + Source: R/GS.R
RRBLUP_SCA.Rd
diff --git a/reference/RRBLUP_SCA2.html b/reference/RRBLUP_SCA2.html index e2ad7357..ec1d3b9f 100644 --- a/reference/RRBLUP_SCA2.html +++ b/reference/RRBLUP_SCA2.html @@ -50,7 +50,7 @@

RR-BLUP SCA Model 2

- Source: R/GS.R + Source: R/GS.R
RRBLUP_SCA2.Rd
diff --git a/reference/RRsol-class.html b/reference/RRsol-class.html index bf1c764b..3f24968f 100644 --- a/reference/RRsol-class.html +++ b/reference/RRsol-class.html @@ -44,7 +44,7 @@

RR-BLUP Solution

- Source: R/Class-RRsol.R + Source: R/Class-RRsol.R
RRsol-class.Rd
diff --git a/reference/RawPop-class.html b/reference/RawPop-class.html index 0394c429..e56db1cd 100644 --- a/reference/RawPop-class.html +++ b/reference/RawPop-class.html @@ -42,7 +42,7 @@

Raw Population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
RawPop-class.Rd
diff --git a/reference/SimParam.html b/reference/SimParam.html index 82e5fdcf..47c9e5ce 100644 --- a/reference/SimParam.html +++ b/reference/SimParam.html @@ -44,7 +44,7 @@

Simulation parameters

- Source: R/Class-SimParam.R + Source: R/Class-SimParam.R
SimParam.Rd
diff --git a/reference/TraitA-class.html b/reference/TraitA-class.html index fb13d47c..1531af9b 100644 --- a/reference/TraitA-class.html +++ b/reference/TraitA-class.html @@ -44,7 +44,7 @@

Additive trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitA-class.Rd
diff --git a/reference/TraitA2-class.html b/reference/TraitA2-class.html index 10f2444a..7f34132a 100644 --- a/reference/TraitA2-class.html +++ b/reference/TraitA2-class.html @@ -46,7 +46,7 @@

Sex specific additive trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitA2-class.Rd
diff --git a/reference/TraitA2D-class.html b/reference/TraitA2D-class.html index a311ec40..b765e904 100644 --- a/reference/TraitA2D-class.html +++ b/reference/TraitA2D-class.html @@ -44,7 +44,7 @@

Sex specific additive and dominance trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitA2D-class.Rd
diff --git a/reference/TraitAD-class.html b/reference/TraitAD-class.html index e0b51873..9b994328 100644 --- a/reference/TraitAD-class.html +++ b/reference/TraitAD-class.html @@ -44,7 +44,7 @@

Additive and dominance trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitAD-class.Rd
diff --git a/reference/TraitADE-class.html b/reference/TraitADE-class.html index b8fabb00..f786b883 100644 --- a/reference/TraitADE-class.html +++ b/reference/TraitADE-class.html @@ -44,7 +44,7 @@

Additive, dominance, and epistatic trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitADE-class.Rd
diff --git a/reference/TraitADEG-class.html b/reference/TraitADEG-class.html index 52d026e1..3ef2cbb3 100644 --- a/reference/TraitADEG-class.html +++ b/reference/TraitADEG-class.html @@ -44,7 +44,7 @@

Additive, dominance, epistasis, and GxE trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitADEG-class.Rd
diff --git a/reference/TraitADG-class.html b/reference/TraitADG-class.html index 540ab468..55510d96 100644 --- a/reference/TraitADG-class.html +++ b/reference/TraitADG-class.html @@ -44,7 +44,7 @@

Additive, dominance and GxE trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitADG-class.Rd
diff --git a/reference/TraitAE-class.html b/reference/TraitAE-class.html index 7bd6ec89..827eac8e 100644 --- a/reference/TraitAE-class.html +++ b/reference/TraitAE-class.html @@ -44,7 +44,7 @@

Additive and epistatic trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitAE-class.Rd
diff --git a/reference/TraitAEG-class.html b/reference/TraitAEG-class.html index 3277d986..cbd98ba0 100644 --- a/reference/TraitAEG-class.html +++ b/reference/TraitAEG-class.html @@ -44,7 +44,7 @@

Additive, epistasis and GxE trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitAEG-class.Rd
diff --git a/reference/TraitAG-class.html b/reference/TraitAG-class.html index cb4d943e..5db15a89 100644 --- a/reference/TraitAG-class.html +++ b/reference/TraitAG-class.html @@ -44,7 +44,7 @@

Additive and GxE trait

- Source: R/Class-LociMap.R + Source: R/Class-LociMap.R
TraitAG-class.Rd
diff --git a/reference/aa.html b/reference/aa.html index 8870cb8e..182198c8 100644 --- a/reference/aa.html +++ b/reference/aa.html @@ -44,7 +44,7 @@

Additive-by-additive epistatic deviations

- Source: R/popSummary.R + Source: R/popSummary.R
aa.Rd
diff --git a/reference/addSegSite.html b/reference/addSegSite.html index 7a552a11..0ae3f553 100644 --- a/reference/addSegSite.html +++ b/reference/addSegSite.html @@ -46,7 +46,7 @@

Add segregating site to MapPop

- Source: R/founderPop.R + Source: R/founderPop.R
addSegSite.Rd
diff --git a/reference/attrition.html b/reference/attrition.html index c4976c5d..329c6e76 100644 --- a/reference/attrition.html +++ b/reference/attrition.html @@ -46,7 +46,7 @@

Lose individuals at random

- Source: R/misc.R + Source: R/misc.R
attrition.Rd
diff --git a/reference/bv.html b/reference/bv.html index d2a42359..a7ba75d9 100644 --- a/reference/bv.html +++ b/reference/bv.html @@ -42,7 +42,7 @@

Breeding value

- Source: R/popSummary.R + Source: R/popSummary.R
bv.Rd
diff --git a/reference/cChr.html b/reference/cChr.html index afc68380..25625471 100644 --- a/reference/cChr.html +++ b/reference/cChr.html @@ -46,7 +46,7 @@

Combine MapPop chromosomes

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
cChr.Rd
diff --git a/reference/calcGCA.html b/reference/calcGCA.html index 424b6288..d2f052d0 100644 --- a/reference/calcGCA.html +++ b/reference/calcGCA.html @@ -46,7 +46,7 @@

Calculate GCA

- Source: R/hybrids.R + Source: R/hybrids.R
calcGCA.Rd
diff --git a/reference/dd.html b/reference/dd.html index d1824c01..4cdc579f 100644 --- a/reference/dd.html +++ b/reference/dd.html @@ -42,7 +42,7 @@

Dominance deviations

- Source: R/popSummary.R + Source: R/popSummary.R
dd.Rd
diff --git a/reference/dot-newPop.html b/reference/dot-newPop.html index ab82af3b..ded4fdc7 100644 --- a/reference/dot-newPop.html +++ b/reference/dot-newPop.html @@ -44,7 +44,7 @@

Create new population (internal)

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
dot-newPop.Rd
diff --git a/reference/doubleGenome.html b/reference/doubleGenome.html index ecd9bdf2..f01e20ec 100644 --- a/reference/doubleGenome.html +++ b/reference/doubleGenome.html @@ -48,7 +48,7 @@

Double the ploidy of individuals

- Source: R/polyploids.R + Source: R/polyploids.R
doubleGenome.Rd
diff --git a/reference/ebv.html b/reference/ebv.html index d56ed537..7ecf237a 100644 --- a/reference/ebv.html +++ b/reference/ebv.html @@ -42,7 +42,7 @@

Estimated breeding value

- Source: R/popSummary.R + Source: R/popSummary.R
ebv.Rd
diff --git a/reference/editGenome.html b/reference/editGenome.html index 7cf20dca..b4514d1c 100644 --- a/reference/editGenome.html +++ b/reference/editGenome.html @@ -46,7 +46,7 @@

Edit genome

- Source: R/misc.R + Source: R/misc.R
editGenome.Rd
diff --git a/reference/editGenomeTopQtl.html b/reference/editGenomeTopQtl.html index 71f31784..81d16219 100644 --- a/reference/editGenomeTopQtl.html +++ b/reference/editGenomeTopQtl.html @@ -46,7 +46,7 @@

Edit genome - the top QTL

- Source: R/misc.R + Source: R/misc.R
editGenomeTopQtl.Rd
diff --git a/reference/fastRRBLUP.html b/reference/fastRRBLUP.html index 3c96a954..0a1740b0 100644 --- a/reference/fastRRBLUP.html +++ b/reference/fastRRBLUP.html @@ -50,7 +50,7 @@

Fast RR-BLUP

- Source: R/GS.R + Source: R/GS.R
fastRRBLUP.Rd
diff --git a/reference/genParam.html b/reference/genParam.html index eb59c885..458df6cb 100644 --- a/reference/genParam.html +++ b/reference/genParam.html @@ -44,7 +44,7 @@

Sumarize genetic parameters

- Source: R/popSummary.R + Source: R/popSummary.R
genParam.Rd
diff --git a/reference/genicVarA.html b/reference/genicVarA.html index ecf73892..3c655bd2 100644 --- a/reference/genicVarA.html +++ b/reference/genicVarA.html @@ -42,7 +42,7 @@

Additive genic variance

- Source: R/popSummary.R + Source: R/popSummary.R
genicVarA.Rd
diff --git a/reference/genicVarAA.html b/reference/genicVarAA.html index 1a51808a..bc61bd9e 100644 --- a/reference/genicVarAA.html +++ b/reference/genicVarAA.html @@ -44,7 +44,7 @@

Additive-by-additive genic variance

- Source: R/popSummary.R + Source: R/popSummary.R
genicVarAA.Rd
diff --git a/reference/genicVarD.html b/reference/genicVarD.html index dc6818c9..66dfab26 100644 --- a/reference/genicVarD.html +++ b/reference/genicVarD.html @@ -42,7 +42,7 @@

Dominance genic variance

- Source: R/popSummary.R + Source: R/popSummary.R
genicVarD.Rd
diff --git a/reference/genicVarG.html b/reference/genicVarG.html index 6860f7b6..1ef1f81f 100644 --- a/reference/genicVarG.html +++ b/reference/genicVarG.html @@ -42,7 +42,7 @@

Total genic variance

- Source: R/popSummary.R + Source: R/popSummary.R
genicVarG.Rd
diff --git a/reference/getGenMap.html b/reference/getGenMap.html index e8f8450e..35e82d23 100644 --- a/reference/getGenMap.html +++ b/reference/getGenMap.html @@ -42,7 +42,7 @@

Get genetic map

- Source: R/pullGeno.R + Source: R/pullGeno.R
getGenMap.Rd
diff --git a/reference/getNumThreads.html b/reference/getNumThreads.html index f723b95c..6e9a8d4a 100644 --- a/reference/getNumThreads.html +++ b/reference/getNumThreads.html @@ -44,7 +44,7 @@

Number of available threads

- Source: R/RcppExports.R + Source: R/RcppExports.R
getNumThreads.Rd
diff --git a/reference/getPed.html b/reference/getPed.html index 4b56dfac..fe5124d3 100644 --- a/reference/getPed.html +++ b/reference/getPed.html @@ -46,7 +46,7 @@

Get pedigree

- Source: R/misc.R + Source: R/misc.R
getPed.Rd
diff --git a/reference/getQtlMap.html b/reference/getQtlMap.html index 5ec9810b..8726c65d 100644 --- a/reference/getQtlMap.html +++ b/reference/getQtlMap.html @@ -44,7 +44,7 @@

Get QTL genetic map

- Source: R/pullGeno.R + Source: R/pullGeno.R
getQtlMap.Rd
diff --git a/reference/getSnpMap.html b/reference/getSnpMap.html index 49166868..84f3a339 100644 --- a/reference/getSnpMap.html +++ b/reference/getSnpMap.html @@ -44,7 +44,7 @@

Get SNP genetic map

- Source: R/pullGeno.R + Source: R/pullGeno.R
getSnpMap.Rd
diff --git a/reference/gv.html b/reference/gv.html index 64e7099b..0e0ddc88 100644 --- a/reference/gv.html +++ b/reference/gv.html @@ -42,7 +42,7 @@

Genetic value

- Source: R/popSummary.R + Source: R/popSummary.R
gv.Rd
diff --git a/reference/hybridCross.html b/reference/hybridCross.html index d945e0c1..8caacf95 100644 --- a/reference/hybridCross.html +++ b/reference/hybridCross.html @@ -52,7 +52,7 @@

Hybrid crossing

- Source: R/hybrids.R + Source: R/hybrids.R
hybridCross.Rd
diff --git a/reference/importGenMap.html b/reference/importGenMap.html index 592b9e89..7ddb5b56 100644 --- a/reference/importGenMap.html +++ b/reference/importGenMap.html @@ -46,7 +46,7 @@

Import genetic map

- Source: R/importData.R + Source: R/importData.R
importGenMap.Rd
diff --git a/reference/importHaplo.html b/reference/importHaplo.html index 81c7f07f..1b27532a 100644 --- a/reference/importHaplo.html +++ b/reference/importHaplo.html @@ -50,7 +50,7 @@

Import haplotypes

- Source: R/importData.R + Source: R/importData.R
importHaplo.Rd
diff --git a/reference/importInbredGeno.html b/reference/importInbredGeno.html index 0bd5700d..a13e1ae4 100644 --- a/reference/importInbredGeno.html +++ b/reference/importInbredGeno.html @@ -58,7 +58,7 @@

Import inbred, diploid genotypes

- Source: R/importData.R + Source: R/importData.R
importInbredGeno.Rd
diff --git a/reference/isFemale.html b/reference/isFemale.html index ab17e2b2..647e5613 100644 --- a/reference/isFemale.html +++ b/reference/isFemale.html @@ -42,7 +42,7 @@

Test if individuals of a population are female or male

- Source: R/misc.R + Source: R/misc.R
isFemale.Rd
diff --git a/reference/isPop.html b/reference/isPop.html index 12884a69..af873f05 100644 --- a/reference/isPop.html +++ b/reference/isPop.html @@ -42,7 +42,7 @@

Test if object is of a Population class

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
isPop.Rd
diff --git a/reference/makeCross.html b/reference/makeCross.html index 63db5506..082b57f1 100644 --- a/reference/makeCross.html +++ b/reference/makeCross.html @@ -44,7 +44,7 @@

Make designed crosses

- Source: R/crossing.R + Source: R/crossing.R
makeCross.Rd
diff --git a/reference/makeCross2.html b/reference/makeCross2.html index 0a3b7b3f..3bd0a2d6 100644 --- a/reference/makeCross2.html +++ b/reference/makeCross2.html @@ -44,7 +44,7 @@

Make designed crosses

- Source: R/crossing.R + Source: R/crossing.R
makeCross2.Rd
diff --git a/reference/makeDH.html b/reference/makeDH.html index e2a365dc..95f50d2e 100644 --- a/reference/makeDH.html +++ b/reference/makeDH.html @@ -46,7 +46,7 @@

Generates DH lines

- Source: R/crossing.R + Source: R/crossing.R
makeDH.Rd
diff --git a/reference/meanEBV.html b/reference/meanEBV.html index f0aa407e..fd68ef98 100644 --- a/reference/meanEBV.html +++ b/reference/meanEBV.html @@ -42,7 +42,7 @@

Mean estimated breeding values

- Source: R/popSummary.R + Source: R/popSummary.R
meanEBV.Rd
diff --git a/reference/meanG.html b/reference/meanG.html index 1bce2df2..b6641fed 100644 --- a/reference/meanG.html +++ b/reference/meanG.html @@ -42,7 +42,7 @@

Mean genetic values

- Source: R/popSummary.R + Source: R/popSummary.R
meanG.Rd
diff --git a/reference/meanP.html b/reference/meanP.html index 183a2f7c..10011fcc 100644 --- a/reference/meanP.html +++ b/reference/meanP.html @@ -42,7 +42,7 @@

Mean phenotypic values

- Source: R/popSummary.R + Source: R/popSummary.R
meanP.Rd
diff --git a/reference/mergeGenome.html b/reference/mergeGenome.html index 79503043..ea3ad64f 100644 --- a/reference/mergeGenome.html +++ b/reference/mergeGenome.html @@ -46,7 +46,7 @@

Combine genomes of individuals

- Source: R/polyploids.R + Source: R/polyploids.R
mergeGenome.Rd
diff --git a/reference/mergePops.html b/reference/mergePops.html index 6833f4f2..1b5b46dd 100644 --- a/reference/mergePops.html +++ b/reference/mergePops.html @@ -44,7 +44,7 @@

Merge list of populations

- Source: R/mergePops.R + Source: R/mergePops.R
mergePops.Rd
diff --git a/reference/mutate.html b/reference/mutate.html index adf1de94..554c191c 100644 --- a/reference/mutate.html +++ b/reference/mutate.html @@ -52,7 +52,7 @@

Add Random Mutations

- Source: R/misc.R + Source: R/misc.R
mutate.Rd
diff --git a/reference/nInd.html b/reference/nInd.html index 9f625139..e1e8848b 100644 --- a/reference/nInd.html +++ b/reference/nInd.html @@ -42,7 +42,7 @@

Number of individuals

- Source: R/popSummary.R + Source: R/popSummary.R
nInd.Rd
diff --git a/reference/newEmptyPop.html b/reference/newEmptyPop.html index 45f43e3b..8cccad11 100644 --- a/reference/newEmptyPop.html +++ b/reference/newEmptyPop.html @@ -44,7 +44,7 @@

Creates an empty population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
newEmptyPop.Rd
diff --git a/reference/newMapPop.html b/reference/newMapPop.html index 2720f8de..d0d06fb2 100644 --- a/reference/newMapPop.html +++ b/reference/newMapPop.html @@ -44,7 +44,7 @@

New MapPop

- Source: R/founderPop.R + Source: R/founderPop.R
newMapPop.Rd
diff --git a/reference/newMultiPop.html b/reference/newMultiPop.html index 1e288bc7..32ae5625 100644 --- a/reference/newMultiPop.html +++ b/reference/newMultiPop.html @@ -46,7 +46,7 @@

Create new Multi Population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
newMultiPop.Rd
diff --git a/reference/newPop.html b/reference/newPop.html index 143ae018..9da8ecf8 100644 --- a/reference/newPop.html +++ b/reference/newPop.html @@ -50,7 +50,7 @@

Create new population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
newPop.Rd
diff --git a/reference/pedigreeCross.html b/reference/pedigreeCross.html index 6fa23a65..e2189709 100644 --- a/reference/pedigreeCross.html +++ b/reference/pedigreeCross.html @@ -54,7 +54,7 @@

Pedigree cross

- Source: R/crossing.R + Source: R/crossing.R
pedigreeCross.Rd
diff --git a/reference/pheno.html b/reference/pheno.html index 5397eaa9..51293f4d 100644 --- a/reference/pheno.html +++ b/reference/pheno.html @@ -42,7 +42,7 @@

Phenotype

- Source: R/popSummary.R + Source: R/popSummary.R
pheno.Rd
diff --git a/reference/popVar.html b/reference/popVar.html index b1a76c80..872fa829 100644 --- a/reference/popVar.html +++ b/reference/popVar.html @@ -48,7 +48,7 @@

Population variance

- Source: R/RcppExports.R + Source: R/RcppExports.R
popVar.Rd
diff --git a/reference/pullIbdHaplo.html b/reference/pullIbdHaplo.html index df84bde1..914e9f9b 100644 --- a/reference/pullIbdHaplo.html +++ b/reference/pullIbdHaplo.html @@ -42,7 +42,7 @@

Pull IBD haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullIbdHaplo.Rd
diff --git a/reference/pullMarkerGeno.html b/reference/pullMarkerGeno.html index 9438cde2..e0304eea 100644 --- a/reference/pullMarkerGeno.html +++ b/reference/pullMarkerGeno.html @@ -44,7 +44,7 @@

Pull marker genotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullMarkerGeno.Rd
diff --git a/reference/pullMarkerHaplo.html b/reference/pullMarkerHaplo.html index d21fb201..b9bed9fb 100644 --- a/reference/pullMarkerHaplo.html +++ b/reference/pullMarkerHaplo.html @@ -44,7 +44,7 @@

Pull marker haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullMarkerHaplo.Rd
diff --git a/reference/pullQtlGeno.html b/reference/pullQtlGeno.html index 1eef1bed..297bf530 100644 --- a/reference/pullQtlGeno.html +++ b/reference/pullQtlGeno.html @@ -42,7 +42,7 @@

Pull QTL genotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullQtlGeno.Rd
diff --git a/reference/pullQtlHaplo.html b/reference/pullQtlHaplo.html index 463ce788..a15bbc4a 100644 --- a/reference/pullQtlHaplo.html +++ b/reference/pullQtlHaplo.html @@ -42,7 +42,7 @@

Pull QTL haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullQtlHaplo.Rd
diff --git a/reference/pullSegSiteGeno.html b/reference/pullSegSiteGeno.html index 5b5f560e..778f4c17 100644 --- a/reference/pullSegSiteGeno.html +++ b/reference/pullSegSiteGeno.html @@ -42,7 +42,7 @@

Pull segregating site genotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullSegSiteGeno.Rd
diff --git a/reference/pullSegSiteHaplo.html b/reference/pullSegSiteHaplo.html index c05c01c0..55db1d66 100644 --- a/reference/pullSegSiteHaplo.html +++ b/reference/pullSegSiteHaplo.html @@ -42,7 +42,7 @@

Pull seg site haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullSegSiteHaplo.Rd
diff --git a/reference/pullSnpGeno.html b/reference/pullSnpGeno.html index 6fb2f59e..2423c2fc 100644 --- a/reference/pullSnpGeno.html +++ b/reference/pullSnpGeno.html @@ -42,7 +42,7 @@

Pull SNP genotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullSnpGeno.Rd
diff --git a/reference/pullSnpHaplo.html b/reference/pullSnpHaplo.html index 1eb83027..fe428c1f 100644 --- a/reference/pullSnpHaplo.html +++ b/reference/pullSnpHaplo.html @@ -42,7 +42,7 @@

Pull SNP haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
pullSnpHaplo.Rd
diff --git a/reference/quickHaplo.html b/reference/quickHaplo.html index d9fe233d..ea0bdfd0 100644 --- a/reference/quickHaplo.html +++ b/reference/quickHaplo.html @@ -46,7 +46,7 @@

Quick founder haplotype simulation

- Source: R/founderPop.R + Source: R/founderPop.R
quickHaplo.Rd
diff --git a/reference/randCross.html b/reference/randCross.html index 4df9db12..ea56d950 100644 --- a/reference/randCross.html +++ b/reference/randCross.html @@ -44,7 +44,7 @@

Make random crosses

- Source: R/crossing.R + Source: R/crossing.R
randCross.Rd
diff --git a/reference/randCross2.html b/reference/randCross2.html index c7123c99..0c13c6ca 100644 --- a/reference/randCross2.html +++ b/reference/randCross2.html @@ -46,7 +46,7 @@

Make random crosses

- Source: R/crossing.R + Source: R/crossing.R
randCross2.Rd
diff --git a/reference/reduceGenome.html b/reference/reduceGenome.html index 5bbe647c..95b037ef 100644 --- a/reference/reduceGenome.html +++ b/reference/reduceGenome.html @@ -52,7 +52,7 @@

Create individuals with reduced ploidy

- Source: R/polyploids.R + Source: R/polyploids.R
reduceGenome.Rd
diff --git a/reference/resetPop.html b/reference/resetPop.html index ecf9aa14..b90cf083 100644 --- a/reference/resetPop.html +++ b/reference/resetPop.html @@ -44,7 +44,7 @@

Reset population

- Source: R/Class-Pop.R + Source: R/Class-Pop.R
resetPop.Rd
diff --git a/reference/runMacs.html b/reference/runMacs.html index 1728bf17..1087f217 100644 --- a/reference/runMacs.html +++ b/reference/runMacs.html @@ -46,7 +46,7 @@

Create founder haplotypes using MaCS

- Source: R/founderPop.R + Source: R/founderPop.R
runMacs.Rd
diff --git a/reference/runMacs2.html b/reference/runMacs2.html index f050a8a7..8efaa9d6 100644 --- a/reference/runMacs2.html +++ b/reference/runMacs2.html @@ -56,7 +56,7 @@

Alternative wrapper for MaCS

- Source: R/founderPop.R + Source: R/founderPop.R
runMacs2.Rd
diff --git a/reference/sampleHaplo.html b/reference/sampleHaplo.html index 43e4b87d..1a669231 100644 --- a/reference/sampleHaplo.html +++ b/reference/sampleHaplo.html @@ -44,7 +44,7 @@

Sample haplotypes from a MapPop

- Source: R/founderPop.R + Source: R/founderPop.R
sampleHaplo.Rd
diff --git a/reference/selIndex.html b/reference/selIndex.html index 800be08e..c5e247eb 100644 --- a/reference/selIndex.html +++ b/reference/selIndex.html @@ -48,7 +48,7 @@

Selection index

- Source: R/misc.R + Source: R/misc.R
selIndex.Rd
diff --git a/reference/selInt.html b/reference/selInt.html index ee582194..0e9bc056 100644 --- a/reference/selInt.html +++ b/reference/selInt.html @@ -42,7 +42,7 @@

Selection intensity

- Source: R/misc.R + Source: R/misc.R
selInt.Rd
diff --git a/reference/selectCross.html b/reference/selectCross.html index 5f3c0091..6226439a 100644 --- a/reference/selectCross.html +++ b/reference/selectCross.html @@ -54,7 +54,7 @@

Select and randomly cross

- Source: R/crossing.R + Source: R/crossing.R
selectCross.Rd
diff --git a/reference/selectFam.html b/reference/selectFam.html index 88e9967d..58b67265 100644 --- a/reference/selectFam.html +++ b/reference/selectFam.html @@ -44,7 +44,7 @@

Select families

- Source: R/selection.R + Source: R/selection.R
selectFam.Rd
diff --git a/reference/selectInd.html b/reference/selectInd.html index 270fbce9..f4aaf986 100644 --- a/reference/selectInd.html +++ b/reference/selectInd.html @@ -44,7 +44,7 @@

Select individuals

- Source: R/selection.R + Source: R/selection.R
selectInd.Rd
diff --git a/reference/selectOP.html b/reference/selectOP.html index aafa59a1..092dd75a 100644 --- a/reference/selectOP.html +++ b/reference/selectOP.html @@ -48,7 +48,7 @@

Select open pollinating plants

- Source: R/selection.R + Source: R/selection.R
selectOP.Rd
diff --git a/reference/selectWithinFam.html b/reference/selectWithinFam.html index 1976f9c7..1a25d362 100644 --- a/reference/selectWithinFam.html +++ b/reference/selectWithinFam.html @@ -46,7 +46,7 @@

Select individuals within families

- Source: R/selection.R + Source: R/selection.R
selectWithinFam.Rd
diff --git a/reference/self.html b/reference/self.html index a5e9e7b3..cd46d7e1 100644 --- a/reference/self.html +++ b/reference/self.html @@ -44,7 +44,7 @@

Self individuals

- Source: R/crossing.R + Source: R/crossing.R
self.Rd
diff --git a/reference/setEBV.html b/reference/setEBV.html index 3c59a328..de5d3c43 100644 --- a/reference/setEBV.html +++ b/reference/setEBV.html @@ -50,7 +50,7 @@

Set estimated breeding values (EBV)

- Source: R/GS.R + Source: R/GS.R
setEBV.Rd
diff --git a/reference/setMarkerHaplo.html b/reference/setMarkerHaplo.html index 38e4584e..ee5fb981 100644 --- a/reference/setMarkerHaplo.html +++ b/reference/setMarkerHaplo.html @@ -44,7 +44,7 @@

Set marker haplotypes

- Source: R/pullGeno.R + Source: R/pullGeno.R
setMarkerHaplo.Rd
diff --git a/reference/setPheno.html b/reference/setPheno.html index 5cdd3db0..4c3b1bc0 100644 --- a/reference/setPheno.html +++ b/reference/setPheno.html @@ -44,7 +44,7 @@

Set phenotypes

- Source: R/phenotypes.R + Source: R/phenotypes.R
setPheno.Rd
diff --git a/reference/setPhenoGCA.html b/reference/setPhenoGCA.html index 17779dd8..82d0acba 100644 --- a/reference/setPhenoGCA.html +++ b/reference/setPhenoGCA.html @@ -44,7 +44,7 @@

Set GCA as phenotype

- Source: R/hybrids.R + Source: R/hybrids.R
setPhenoGCA.Rd
diff --git a/reference/setPhenoProgTest.html b/reference/setPhenoProgTest.html index 5253a5f3..eadc02d6 100644 --- a/reference/setPhenoProgTest.html +++ b/reference/setPhenoProgTest.html @@ -48,7 +48,7 @@

Set progeny test as phenotype

- Source: R/hybrids.R + Source: R/hybrids.R
setPhenoProgTest.Rd
diff --git a/reference/smithHazel.html b/reference/smithHazel.html index 1b1f2588..178bb7a0 100644 --- a/reference/smithHazel.html +++ b/reference/smithHazel.html @@ -44,7 +44,7 @@

Calculate Smith-Hazel weights

- Source: R/misc.R + Source: R/misc.R
smithHazel.Rd
diff --git a/reference/solveMKM.html b/reference/solveMKM.html index be3b7c06..b932523b 100644 --- a/reference/solveMKM.html +++ b/reference/solveMKM.html @@ -42,7 +42,7 @@

Solve Multikernel Model

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveMKM.Rd
diff --git a/reference/solveMVM.html b/reference/solveMVM.html index 9faa9338..5dc422ef 100644 --- a/reference/solveMVM.html +++ b/reference/solveMVM.html @@ -42,7 +42,7 @@

Solve Multivariate Model

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveMVM.Rd
diff --git a/reference/solveRRBLUP.html b/reference/solveRRBLUP.html index dc93a407..6538afff 100644 --- a/reference/solveRRBLUP.html +++ b/reference/solveRRBLUP.html @@ -42,7 +42,7 @@

Solve RR-BLUP

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUP.Rd
diff --git a/reference/solveRRBLUPMK.html b/reference/solveRRBLUPMK.html index 32c7ae60..7601b297 100644 --- a/reference/solveRRBLUPMK.html +++ b/reference/solveRRBLUPMK.html @@ -42,7 +42,7 @@

Solve Multikernel RR-BLUP

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUPMK.Rd
diff --git a/reference/solveRRBLUPMV.html b/reference/solveRRBLUPMV.html index 9741c2a4..063a5496 100644 --- a/reference/solveRRBLUPMV.html +++ b/reference/solveRRBLUPMV.html @@ -42,7 +42,7 @@

Solve Multivariate RR-BLUP

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUPMV.Rd
diff --git a/reference/solveRRBLUP_EM.html b/reference/solveRRBLUP_EM.html index 53124bc1..f5e5a013 100644 --- a/reference/solveRRBLUP_EM.html +++ b/reference/solveRRBLUP_EM.html @@ -44,7 +44,7 @@

Solve RR-BLUP with EM

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUP_EM.Rd
diff --git a/reference/solveRRBLUP_EM2.html b/reference/solveRRBLUP_EM2.html index 70939f96..20a416c7 100644 --- a/reference/solveRRBLUP_EM2.html +++ b/reference/solveRRBLUP_EM2.html @@ -44,7 +44,7 @@

Solve RR-BLUP with EM and 2 random effects

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUP_EM2.Rd
diff --git a/reference/solveRRBLUP_EM3.html b/reference/solveRRBLUP_EM3.html index 36210f5b..6af98ca5 100644 --- a/reference/solveRRBLUP_EM3.html +++ b/reference/solveRRBLUP_EM3.html @@ -44,7 +44,7 @@

Solve RR-BLUP with EM and 3 random effects

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveRRBLUP_EM3.Rd
diff --git a/reference/solveUVM.html b/reference/solveUVM.html index e21415a1..1780d9e1 100644 --- a/reference/solveUVM.html +++ b/reference/solveUVM.html @@ -42,7 +42,7 @@

Solve Univariate Model

- Source: R/RcppExports.R + Source: R/RcppExports.R
solveUVM.Rd
diff --git a/reference/transMat.html b/reference/transMat.html index 692961d1..e3274461 100644 --- a/reference/transMat.html +++ b/reference/transMat.html @@ -52,7 +52,7 @@

Linear transformation matrix

- Source: R/misc.R + Source: R/misc.R
transMat.Rd
diff --git a/reference/usefulness.html b/reference/usefulness.html index 31216d16..5656ed2b 100644 --- a/reference/usefulness.html +++ b/reference/usefulness.html @@ -42,7 +42,7 @@

Usefulness criterion

- Source: R/misc.R + Source: R/misc.R
usefulness.Rd
diff --git a/reference/varA.html b/reference/varA.html index 02ec77b7..2cb764a6 100644 --- a/reference/varA.html +++ b/reference/varA.html @@ -42,7 +42,7 @@

Additive variance

- Source: R/popSummary.R + Source: R/popSummary.R
varA.Rd
diff --git a/reference/varAA.html b/reference/varAA.html index 1ceedac8..84cee8f3 100644 --- a/reference/varAA.html +++ b/reference/varAA.html @@ -44,7 +44,7 @@

Additive-by-additive epistatic variance

- Source: R/popSummary.R + Source: R/popSummary.R
varAA.Rd
diff --git a/reference/varD.html b/reference/varD.html index 90413d3c..c680a0b1 100644 --- a/reference/varD.html +++ b/reference/varD.html @@ -42,7 +42,7 @@

Dominance variance

- Source: R/popSummary.R + Source: R/popSummary.R
varD.Rd
diff --git a/reference/varEBV.html b/reference/varEBV.html index 1822ee72..1bd3a275 100644 --- a/reference/varEBV.html +++ b/reference/varEBV.html @@ -42,7 +42,7 @@

Variance of estimated breeding values

- Source: R/popSummary.R + Source: R/popSummary.R
varEBV.Rd
diff --git a/reference/varG.html b/reference/varG.html index 25daedaf..9496d921 100644 --- a/reference/varG.html +++ b/reference/varG.html @@ -42,7 +42,7 @@

Total genetic variance

- Source: R/popSummary.R + Source: R/popSummary.R
varG.Rd
diff --git a/reference/varP.html b/reference/varP.html index 78a8e755..9b2f733b 100644 --- a/reference/varP.html +++ b/reference/varP.html @@ -42,7 +42,7 @@

Phenotypic variance

- Source: R/popSummary.R + Source: R/popSummary.R
varP.Rd
diff --git a/reference/writePlink.html b/reference/writePlink.html index b655edc2..b9623574 100644 --- a/reference/writePlink.html +++ b/reference/writePlink.html @@ -54,7 +54,7 @@

Writes a Pop-class as PLINK files

- Source: R/writePlink.R + Source: R/writePlink.R
writePlink.Rd
diff --git a/reference/writeRecords.html b/reference/writeRecords.html index 4e5d76d0..1fb96a51 100644 --- a/reference/writeRecords.html +++ b/reference/writeRecords.html @@ -42,7 +42,7 @@

Write data records

- Source: R/writeRecords.R + Source: R/writeRecords.R
writeRecords.Rd