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+ -org.gbif.api.vocabulary.collections (GBIF Common :: API 1.13.1 API) - +org.gbif.api.vocabulary.collections (GBIF Common :: API 1.13.2 API) + @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ diff --git a/apidocs/org/gbif/api/vocabulary/package-summary.html b/apidocs/org/gbif/api/vocabulary/package-summary.html index 0f0b9ab498..f9df021fb6 100644 --- a/apidocs/org/gbif/api/vocabulary/package-summary.html +++ b/apidocs/org/gbif/api/vocabulary/package-summary.html @@ -2,10 +2,10 @@ - + -org.gbif.api.vocabulary (GBIF Common :: API 1.13.1 API) - +org.gbif.api.vocabulary (GBIF Common :: API 1.13.2 API) + @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ @@ -13,7 +13,7 @@ diff --git a/apidocs/org/gbif/api/ws/mixin/package-summary.html b/apidocs/org/gbif/api/ws/mixin/package-summary.html index 7189c9dbc8..4142317219 100644 --- a/apidocs/org/gbif/api/ws/mixin/package-summary.html +++ b/apidocs/org/gbif/api/ws/mixin/package-summary.html @@ -2,10 +2,10 @@ - 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GBIF Common :: API

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total55,731 of 89,45737%5,700 of 7,53324%6,7738,4968,59313,4363,4174,710225412
org.gbif.api.model.registry8,1741,26813%858566%9121,0781,2651,591466621920
org.gbif.api.model.collections7,1090%1,1820%9609608018013693691515
org.gbif.api.model.checklistbank5,0983,36939%43841648%6889938961,575355566416
org.gbif.api.model.occurrence3,8934,01850%75642035%7661,019458857207431514
org.gbif.api.model.event3,6190%5940%46446417417416716744
org.gbif.api.vocabulary.collections2,5170%n/a1515247247151599
org.gbif.api.model.checklistbank.search2,3181475%1600%25525841643317517856
org.gbif.api.model.pipelines2,1621,07333%1705424%215280344553116168816
org.gbif.api.model.registry.search1,5150%780%1761762752751371371212
org.gbif.api.vocabulary1,41814,63191%5518577%993071961,590571872064
org.gbif.api.model.registry.eml1,3103%994%149151264279979967
org.gbif.api.util1,2622,47166%23730055%22045124979751164321
org.gbif.api.model.collections.lookup1,2350%980%13613623423487871010
org.gbif.api.model.common1,0771,17752%958547%13025017442549160415
org.gbif.api.model.common.search99918015%502028%121132202248869748
org.gbif.api.model.crawler9971,40558%1239944%1202401334203112908
org.gbif.api.util.iterables9740%680%10610619419472722121
org.gbif.api.model.metrics.cube94014913%50%19324477142724
org.gbif.api.model.collections.request7940%0%13213228028013013055
org.gbif.api.model.common.messaging7500%0%6262158158595988
org.gbif.api.model.collections.suggestions7080%760%109109149149717177
org.gbif.api.model.literature.search5980%n/a7979157157797933
org.gbif.api.model.registry.eml.curatorial5494%500%6667113115414245
org.gbif.api.model.predicate51970957%646650%74140942543275118
org.gbif.api.model.collections.duplicates5140%480%8080116116565633
org.gbif.api.model.literature4820%n/a3350503333
org.gbif.api.v24670%580%7777104104484844
org.gbif.api.jackson39445153%493340%5810210820627601630
org.gbif.api.model.registry.eml.temporal3696%340%41487080243115
org.gbif.api.model.registry.eml.geospatial3560%200%46468282363644
org.gbif.api.model.occurrence.search3051,31381%n/a5861113236586134
org.gbif.api.model.common.paging30416034%202050%385365104213314
org.gbif.api.model.collections.search2780%340%49496464323222
org.gbif.api.model.pipelines.ws2430%240%44446565323233
org.gbif.api.model.registry.view2270%380%333377141411
org.gbif.api.model.registry.metasync2110%140%20203434131322
org.gbif.api.util.validators.identifierschemes18043070%334356%337739128939110
org.gbif.api.model.collections.view1620%220%29292020181822
org.gbif.api.model.occurrence.geo15840271%181240%22402476102503
org.gbif.api.model.registry.search.collections1440%120%17172525111111
org.gbif.api.model.metrics51%50%1531165572302
org.gbif.api.model20%n/a11122331111212
org.gbif.api.ws.mixin0%n/a4414144411
org.gbif.api.exception0%n/a8817178833
org.gbif.api.model.common.export0%n/a33773311
org.gbif.api.model.collections.merge0%n/a8811118822
org.gbif.api.documentation0%n/a11111111
org.gbif.api.util.validators.email92%50%26180401
org.gbif.api.util.comparators100%100%070120502
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +GBIF Common :: API

GBIF Common :: API

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total55,728 of 89,51037%5,703 of 7,54124%6,7758,5058,59213,4483,4164,715225412
org.gbif.api.model.registry8,1681,27413%858566%9111,0781,2631,591465621920
org.gbif.api.model.collections7,1090%1,1820%9609608018013693691515
org.gbif.api.model.checklistbank5,0983,36939%43841648%6889938961,575355566416
org.gbif.api.model.occurrence3,8934,01850%75642035%7661,019458857207431514
org.gbif.api.model.event3,6190%5940%46446417417416716744
org.gbif.api.vocabulary.collections2,5170%n/a1515247247151599
org.gbif.api.model.checklistbank.search2,3181475%1600%25525841643317517856
org.gbif.api.model.pipelines2,1621,07333%1705424%215280344553116168816
org.gbif.api.model.registry.search1,5150%780%1761762752751371371212
org.gbif.api.vocabulary1,41814,63191%5518577%993071961,590571872064
org.gbif.api.model.registry.eml1,3103%994%149151264279979967
org.gbif.api.util1,2652,52166%24030555%22346025080951169321
org.gbif.api.model.collections.lookup1,2350%980%13613623423487871010
org.gbif.api.model.common1,0771,17752%958547%13025017442549160415
org.gbif.api.model.common.search99918015%502028%121132202248869748
org.gbif.api.model.crawler9971,40558%1239944%1202401334203112908
org.gbif.api.util.iterables9740%680%10610619419472722121
org.gbif.api.model.metrics.cube94014913%50%19324477142724
org.gbif.api.model.collections.request7940%0%13213228028013013055
org.gbif.api.model.common.messaging7500%0%6262158158595988
org.gbif.api.model.collections.suggestions7080%760%109109149149717177
org.gbif.api.model.literature.search5980%n/a7979157157797933
org.gbif.api.model.registry.eml.curatorial5494%500%6667113115414245
org.gbif.api.model.predicate51970957%646650%74140942543275118
org.gbif.api.model.collections.duplicates5140%480%8080116116565633
org.gbif.api.model.literature4820%n/a3350503333
org.gbif.api.v24670%580%7777104104484844
org.gbif.api.jackson39445153%493340%5810210820627601630
org.gbif.api.model.registry.eml.temporal3696%340%41487080243115
org.gbif.api.model.registry.eml.geospatial3560%200%46468282363644
org.gbif.api.model.occurrence.search3051,31381%n/a5861113236586134
org.gbif.api.model.common.paging30416034%202050%385365104213314
org.gbif.api.model.collections.search2780%340%49496464323222
org.gbif.api.model.pipelines.ws2430%240%44446565323233
org.gbif.api.model.registry.view2270%380%333377141411
org.gbif.api.model.registry.metasync2110%140%20203434131322
org.gbif.api.util.validators.identifierschemes18043070%334356%337739128939110
org.gbif.api.model.collections.view1620%220%29292020181822
org.gbif.api.model.occurrence.geo15840271%181240%22402476102503
org.gbif.api.model.registry.search.collections1440%120%17172525111111
org.gbif.api.model.metrics51%50%1531165572302
org.gbif.api.model20%n/a11122331111212
org.gbif.api.ws.mixin0%n/a4414144411
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org.gbif.api.model.common.export0%n/a33773311
org.gbif.api.model.collections.merge0%n/a8811118822
org.gbif.api.documentation0%n/a11111111
org.gbif.api.util.validators.email92%50%26180401
org.gbif.api.util.comparators100%100%070120502
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/jacoco-sessions.html b/jacoco/jacoco-sessions.html index a2daf4bfee..9335cf40bf 100644 --- a/jacoco/jacoco-sessions.html +++ b/jacoco/jacoco-sessions.html @@ -1 +1 @@ -Sessions

Sessions

This coverage report is based on execution data from the following sessions:

SessionStart TimeDump Time
jenkins-vh.gbif.org-29003dec01-Feb-2024 08:09:3301-Feb-2024 08:09:40

Execution data for the following classes is considered in this report:

ClassId
ch.qos.logback.classic.BasicConfigurator0047a66eeae0d6b2
ch.qos.logback.classic.Levele2155b45608f35d7
ch.qos.logback.classic.Loggerf35d4d4ad6b0173a
ch.qos.logback.classic.LoggerContextd057ce3cea631d6b
ch.qos.logback.classic.layout.TTLLLayout17db39eb61acaa64
ch.qos.logback.classic.pattern.ClassicConverter78403f02659989af
ch.qos.logback.classic.pattern.ThrowableHandlingConverter266cc4ca75fcd39d
ch.qos.logback.classic.pattern.ThrowableProxyConverter46dc88ad0c97e462
ch.qos.logback.classic.selector.DefaultContextSelectorfd861e3242ccff2f
ch.qos.logback.classic.spi.EventArgUtil88f3990bf293da69
ch.qos.logback.classic.spi.LoggerContextVOecac106025bca4a3
ch.qos.logback.classic.spi.LoggingEvent75c5fe4974050a6f
ch.qos.logback.classic.spi.TurboFilterListaa3cf39d0c0c651e
ch.qos.logback.classic.util.ContextInitializerf560906e9553d69f
ch.qos.logback.classic.util.ContextSelectorStaticBinder271bbf6fa66123b1
ch.qos.logback.classic.util.EnvUtil39b5543082458460
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org.locationtech.jts.algorithm.LineIntersectorc28713e25bcf6c5a
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org.locationtech.jts.geomgraph.EdgeNodingValidatorc01900a6dae49db1
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org.locationtech.jts.geomgraph.index.SegmentIntersector4df0b8cf5f2fa2e1
org.locationtech.jts.geomgraph.index.SimpleMCSweepLineIntersector50bbf923819dc459
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org.locationtech.jts.index.chain.MonotoneChain80b5eea07061ce46
org.locationtech.jts.index.chain.MonotoneChainBuilder5bdb5add08753059
org.locationtech.jts.index.chain.MonotoneChainOverlapAction9f7adf860d18e677
org.locationtech.jts.index.intervalrtree.IntervalRTreeBranchNode025a86b8e3043c95
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org.locationtech.jts.index.intervalrtree.IntervalRTreeNode.NodeComparator05455d72d83713dc
org.locationtech.jts.index.intervalrtree.SortedPackedIntervalRTreed06bcc5b0078d451
org.locationtech.jts.index.strtree.AbstractNode12703ffd35bc1062
org.locationtech.jts.index.strtree.AbstractSTRtreef1729bdde1681497
org.locationtech.jts.index.strtree.ItemBoundable6d2848a4d5327116
org.locationtech.jts.index.strtree.STRtree691c80176a01c43d
org.locationtech.jts.index.strtree.STRtree.1786feacd405e5d47
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org.locationtech.jts.index.strtree.STRtree.STRtreeNoded35bb22802313e9c
org.locationtech.jts.math.DDa98c66cf0c1156aa
org.locationtech.jts.noding.BasicSegmentStringd98d2987f10169e1
org.locationtech.jts.noding.FastNodingValidatorf8b5f4e2c6972ed3
org.locationtech.jts.noding.MCIndexNoder39a72cb02a2018bf
org.locationtech.jts.noding.MCIndexNoder.SegmentOverlapActionf8b2a2029dcc3616
org.locationtech.jts.noding.NodingIntersectionFinderc621a6082d716124
org.locationtech.jts.noding.OrientedCoordinateArrayb69ce54a894f3529
org.locationtech.jts.noding.SinglePassNoder1045f6555c337900
org.locationtech.jts.operation.GeometryGraphOperation5325a78c452743be
org.locationtech.jts.operation.overlay.LineBuilderd5640d100af07a19
org.locationtech.jts.operation.overlay.MaximalEdgeRing755548cc74d221a9
org.locationtech.jts.operation.overlay.MinimalEdgeRing96e0f524b62423ec
org.locationtech.jts.operation.overlay.OverlayNodeFactory29962d1f27c2405c
org.locationtech.jts.operation.overlay.OverlayOp7cf6add95f31104b
org.locationtech.jts.operation.overlay.PointBuilder532731f83887dadb
org.locationtech.jts.operation.overlay.PolygonBuilder76dcebf2b8561d61
org.locationtech.jts.operation.overlay.snap.SnapIfNeededOverlayOp1a12c345089c1267
org.locationtech.jts.operation.relate.EdgeEndBuildere150419929862ab1
org.locationtech.jts.operation.relate.EdgeEndBundleb44222b1f6f78c7a
org.locationtech.jts.operation.relate.EdgeEndBundleStarfc7b22abc979e988
org.locationtech.jts.operation.relate.RelateNode405bb6e4df451e7b
org.locationtech.jts.operation.relate.RelateNodeFactory39b6ff2e73f1d5e7
org.locationtech.jts.operation.relate.RelateNodeGraph3e0dfcc2f85174fe
org.locationtech.jts.operation.union.CascadedPolygonUnionb480347c1e3abb38
org.locationtech.jts.operation.union.UnaryUnionOpdf44c1d3d506aea2
org.locationtech.jts.operation.valid.ConnectedInteriorTesterda81d9d33f018a29
org.locationtech.jts.operation.valid.ConsistentAreaTesterde06d96988de6434
org.locationtech.jts.operation.valid.IndexedNestedRingTesterb85640de652d57ad
org.locationtech.jts.operation.valid.IsValidOpd227b76a8426a79b
org.locationtech.jts.operation.valid.TopologyValidationErrore7a03b446d54cd86
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org.locationtech.spatial4j.context.jts.DatelineRulea99cdbc50e647e1a
org.locationtech.spatial4j.context.jts.JtsSpatialContextb0ea4629c9cdff5d
org.locationtech.spatial4j.context.jts.JtsSpatialContextFactory31ed49df20909170
org.locationtech.spatial4j.context.jts.ValidationRule2182153a036e9742
org.locationtech.spatial4j.distance.AbstractDistanceCalculator7025cbcc7da74bb4
org.locationtech.spatial4j.distance.DistanceUtils3947d42758a633a3
org.locationtech.spatial4j.distance.GeodesicSphereDistCalcb7fabe002eeb1e9b
org.locationtech.spatial4j.distance.GeodesicSphereDistCalc.Haversineb31b41ee916ad10d
org.locationtech.spatial4j.exception.InvalidShapeException5e0e284c21568fdf
org.locationtech.spatial4j.io.BinaryCodec523766a655e8e104
org.locationtech.spatial4j.io.GeoJSONWriter0fd0ad31f25d2762
org.locationtech.spatial4j.io.LegacyShapeReader008ff22c95a76b88
org.locationtech.spatial4j.io.LegacyShapeWriterb784ba4226b6f339
org.locationtech.spatial4j.io.OnePointsBuilder5d0cd01451ddfafd
org.locationtech.spatial4j.io.PolyshapeReaderab3e4ba1a188436a
org.locationtech.spatial4j.io.PolyshapeWriteref4c3fc1b074b6de
org.locationtech.spatial4j.io.SupportedFormats8833a43aaef2b71b
org.locationtech.spatial4j.io.WKTReader3cee1a883bad1031
org.locationtech.spatial4j.io.WKTReader.Stated98d296bab0c6a4b
org.locationtech.spatial4j.io.WKTWriter6e3b36f71b094886
org.locationtech.spatial4j.io.jts.JtsBinaryCodeceaf8d462f1eaf953
org.locationtech.spatial4j.io.jts.JtsGeoJSONWriter01fa0f4bf2b4dbaa
org.locationtech.spatial4j.io.jts.JtsPolyshapeWritera3f5889eafe5a424
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org.locationtech.spatial4j.shape.BaseShape3373b25f77914e53
org.locationtech.spatial4j.shape.impl.BBoxCalculatord2a09c0b543da90d
org.locationtech.spatial4j.shape.impl.RectangleImpl90d731b49874d44d
org.locationtech.spatial4j.shape.impl.ShapeFactoryImpl68f0f0743a348bdc
org.locationtech.spatial4j.shape.jts.JtsGeometry2b577fa441aaf05b
org.locationtech.spatial4j.shape.jts.JtsGeometry.29af3b0495022e188
org.locationtech.spatial4j.shape.jts.JtsGeometry.383b020ab0db7b5ad
org.locationtech.spatial4j.shape.jts.JtsPoint540783ac672ba8c3
org.locationtech.spatial4j.shape.jts.JtsShapeFactory17f3828fbd31a136
org.locationtech.spatial4j.shape.jts.JtsShapeFactory.CoordinatesAccumulatorcd0ccce097d283a9
org.locationtech.spatial4j.shape.jts.JtsShapeFactory.JtsLineStringBuilder8b0f8198e1dbe760
org.locationtech.spatial4j.shape.jts.JtsShapeFactory.JtsMultiPolygonBuilderd3dcce921d0466ab
org.locationtech.spatial4j.shape.jts.JtsShapeFactory.JtsPolygonBuilderdf92c12a6f4b489b
org.locationtech.spatial4j.shape.jts.JtsShapeFactory.JtsPolygonBuilder.JtsHoleBuilderf65b2017adb8aef8
org.mockito.Answers7bb49d321e73bbc5
org.mockito.Mockitoc5c93521421697f0
org.mockito.configuration.DefaultMockitoConfiguration7c1c365c15c2133e
org.mockito.internal.MockitoCore8c1dee29fb0da68b
org.mockito.internal.configuration.CaptorAnnotationProcessorb1d3667699da5bde
org.mockito.internal.configuration.ClassPathLoader1837784d8946effa
org.mockito.internal.configuration.DefaultDoNotMockEnforcerc193dbfbfd7e7112
org.mockito.internal.configuration.GlobalConfiguration5d2c645125c6e76f
org.mockito.internal.configuration.IndependentAnnotationEngine6712157121b4c009
org.mockito.internal.configuration.InjectingAnnotationEngine093bcb2236e9e096
org.mockito.internal.configuration.MockAnnotationProcessor63f2cd0aa6f4adfe
org.mockito.internal.configuration.SpyAnnotationEngineb0201f8ea6674009
org.mockito.internal.configuration.plugins.DefaultMockitoPluginsb56656ae000198c7
org.mockito.internal.configuration.plugins.DefaultPluginSwitch973f142b836667e1
org.mockito.internal.configuration.plugins.PluginFinderd946fdf7c3f2c58b
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org.mockito.internal.configuration.plugins.PluginLoadera0b8a7c6baea530e
org.mockito.internal.configuration.plugins.PluginRegistryef9e70f0651edcfb
org.mockito.internal.configuration.plugins.Pluginsff53f63a8240eb6e
org.mockito.internal.creation.MockSettingsImplef96156d4aa39063
org.mockito.internal.creation.bytebuddy.ByteBuddyCrossClassLoaderSerializationSupport91ac516637b8c4ee
org.mockito.internal.creation.bytebuddy.ByteBuddyMockMakere18344ca184c75a1
org.mockito.internal.creation.bytebuddy.BytecodeGenerator896014d879c42ec9
org.mockito.internal.creation.bytebuddy.MockFeatures161a6ae9389d4da3
org.mockito.internal.creation.bytebuddy.MockMethodInterceptor0b02a477841f06a5
org.mockito.internal.creation.bytebuddy.MockMethodInterceptor.ForEqualsb1dc8188a820b808
org.mockito.internal.creation.bytebuddy.MockMethodInterceptor.ForHashCode5950ac1448663d13
org.mockito.internal.creation.bytebuddy.ModuleHandler77380dd282d3eb30
org.mockito.internal.creation.bytebuddy.ModuleHandler.ModuleSystemFoundd8515816e294707d
org.mockito.internal.creation.bytebuddy.ModuleHandler.NoModuleSystemFound48ae3962b292be8d
org.mockito.internal.creation.bytebuddy.SubclassByteBuddyMockMaker11d36e9ecc8c0605
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org.mockito.internal.creation.bytebuddy.SubclassBytecodeGeneratorb13aa2a3c3f5de88
org.mockito.internal.creation.bytebuddy.SubclassInjectionLoader47ea8dba5b15c796
org.mockito.internal.creation.bytebuddy.SubclassInjectionLoader.WithReflection55a84d6cf8f318a1
org.mockito.internal.creation.bytebuddy.TypeCachingBytecodeGenerator123a98feabc81a7a
org.mockito.internal.creation.bytebuddy.TypeCachingBytecodeGenerator.MockitoMockKey8fb34c2e10b7db99
org.mockito.internal.creation.bytebuddy.TypeSupport652949fe1e4bb215
org.mockito.internal.creation.instance.DefaultInstantiatorProvider3900ee0969504a34
org.mockito.internal.creation.instance.ObjenesisInstantiatore451a21eadbc4d30
org.mockito.internal.creation.settings.CreationSettingsc4b00e979fa0a182
org.mockito.internal.exceptions.stacktrace.DefaultStackTraceCleanerProvider475c82ec8ba01c75
org.mockito.internal.handler.InvocationNotifierHandler7c138f78143ab433
org.mockito.internal.handler.MockHandlerFactory236482acbbebaf4a
org.mockito.internal.handler.MockHandlerImpl973b60d05d2d4a4d
org.mockito.internal.handler.NullResultGuardian40a1d637e9eadd05
org.mockito.internal.invocation.MatchersBinderb39b9426c9814ac7
org.mockito.internal.progress.ArgumentMatcherStorageImpl83a3e5fcf460cd8d
org.mockito.internal.progress.MockingProgressImpl92818897164b80b6
org.mockito.internal.progress.MockingProgressImpl.1a1ad00aef40918d3
org.mockito.internal.progress.ThreadSafeMockingProgress5ef9d6f1a875dc18
org.mockito.internal.progress.ThreadSafeMockingProgress.11c85bd989b9441aa
org.mockito.internal.stubbing.DoAnswerStyleStubbingf2057cd0aee1a50b
org.mockito.internal.stubbing.InvocationContainerImpl70d6f02b67d57b4f
org.mockito.internal.stubbing.answers.CallsRealMethods16da2f316c946fec
org.mockito.internal.stubbing.defaultanswers.GloballyConfiguredAnswerf308e3faf16f6212
org.mockito.internal.stubbing.defaultanswers.ReturnsDeepStubs7a1b5ff44181d6b8
org.mockito.internal.stubbing.defaultanswers.ReturnsEmptyValuesfb54ce54650adcb6
org.mockito.internal.stubbing.defaultanswers.ReturnsMocksf923109370288432
org.mockito.internal.stubbing.defaultanswers.ReturnsMoreEmptyValues4a4f9f45d874e56f
org.mockito.internal.stubbing.defaultanswers.ReturnsSmartNulls56e4359834584989
org.mockito.internal.stubbing.defaultanswers.TriesToReturnSelf2df789f77987f023
org.mockito.internal.util.ConsoleMockitoLoggerb50468c7ba4abdba
org.mockito.internal.util.MockCreationValidatorb073c74d6aea57f3
org.mockito.internal.util.MockNameImplc374206ea5426e18
org.mockito.internal.util.MockUtild287b066371cb395
org.mockito.internal.util.StringUtilfc180f2e2cfb19c5
org.mockito.internal.util.collections.Iterablesf2f271f84160edef
org.mockito.internal.util.reflection.ReflectionMemberAccessor5b659ecadce64e6d
org.mockito.internal.verification.DefaultRegisteredInvocations2c81cbe8de7c014f
org.mockito.mock.SerializableMode35d1981ec862bf72
org.objenesis.ObjenesisBase0c1d2fd83029257f
org.objenesis.ObjenesisStdf35c83a75caea811
org.objenesis.instantiator.sun.SunReflectionFactoryHelperd17e7b3403696605
org.objenesis.instantiator.sun.SunReflectionFactoryInstantiator6156947e7d7c507c
org.objenesis.strategy.BaseInstantiatorStrategyb0aaa6460452f5ce
org.objenesis.strategy.PlatformDescriptionc6456f671febfd7c
org.objenesis.strategy.StdInstantiatorStrategyabae05ba56ea35a6
org.slf4j.LoggerFactorya381b7ddf19bf47d
org.slf4j.MDC4d31efbdc380017c
org.slf4j.helpers.FormattingTuple46e388b1eb4cb5c1
org.slf4j.helpers.MessageFormatter42e7db43bad15507
org.slf4j.helpers.NOPLoggerFactory54f5632bfcb8d8d5
org.slf4j.helpers.SubstituteLoggerFactorydc7efc0107a4a62d
org.slf4j.helpers.Util857ff3acc0576435
org.slf4j.impl.StaticLoggerBinder039b3c899e055991
org.slf4j.impl.StaticMDCBinder649700d80abb641d
sun.util.resources.ar.LocaleNames_ard9f4d0bb38e0c966
sun.util.resources.be.LocaleNames_be7639bba360ae3e8b
sun.util.resources.bg.LocaleNames_bge628abf4ecc2a23a
sun.util.resources.ca.LocaleNames_caddf5c489e92e9528
sun.util.resources.cs.LocaleNames_cs7bf9837ff26916f9
sun.util.resources.da.LocaleNames_dad880e486f17d0066
sun.util.resources.de.LocaleNames_de7b6c9bb5eabb5fed
sun.util.resources.el.LocaleNames_elf20f1a1fb9a0ac63
sun.util.resources.es.LocaleNames_es09827a8359cf3d8b
sun.util.resources.et.LocaleNames_et444e74741bcf48fe
sun.util.resources.fi.LocaleNames_fi3b1dc42651d3dbc8
sun.util.resources.fr.LocaleNames_fr741131f365117a58
sun.util.resources.ga.LocaleNames_gaa17c01fc21ff31e8
sun.util.resources.hi.LocaleNames_hidcdd5f6823c8d10f
sun.util.resources.hr.LocaleNames_hrf6d23eaf1152ee94
sun.util.resources.hu.LocaleNames_hub31b9dfda7fc641e
sun.util.resources.in.LocaleNames_in5e7c7f635fc8108f
sun.util.resources.is.LocaleNames_isdab05ae52eaa8e04
sun.util.resources.it.LocaleNames_itebf8afd5a949c500
sun.util.resources.iw.LocaleNames_iw8544fee7bb519e2a
sun.util.resources.ja.LocaleNames_ja2134a4fd12af8f18
sun.util.resources.ko.LocaleNames_ko9c036b0627b0d26f
sun.util.resources.lt.LocaleNames_lt0a2e088fd1a2d75c
sun.util.resources.lv.LocaleNames_lv497b613eb3f22999
sun.util.resources.mk.LocaleNames_mkb2f9afcc072e10bd
sun.util.resources.ms.LocaleNames_msf54efc4586b00aa7
sun.util.resources.mt.LocaleNames_mt4ba7e5e33ea0e85e
sun.util.resources.nl.LocaleNames_nldc75f9fe43221b42
sun.util.resources.no.LocaleNames_no86ade73a26fd286c
sun.util.resources.no.LocaleNames_no_NO_NY37c04f93bfd35478
sun.util.resources.pl.LocaleNames_pl727d131505e87005
sun.util.resources.pt.LocaleNames_pt8d602d0c8f6bb1ff
sun.util.resources.ro.LocaleNames_ro0acd5c8b3297423c
sun.util.resources.ru.LocaleNames_rufc0c6600de0c5f7e
sun.util.resources.sk.LocaleNames_skd8ba8e0555d61d28
sun.util.resources.sl.LocaleNames_sl61e57f5f84b43121
sun.util.resources.sq.LocaleNames_sq5f66699988fc699b
sun.util.resources.sr.LocaleNames_srdd4c94e9b5cf1da3
sun.util.resources.sv.LocaleNames_sv4a9d321050c9e0a3
sun.util.resources.th.LocaleNames_th38d5c55be55ffd5f
sun.util.resources.tr.LocaleNames_tr562ecec7c95e956e
sun.util.resources.uk.LocaleNames_ukb5f2debcfe219b20
sun.util.resources.vi.LocaleNames_vi0c6312fe756378ee
sun.util.resources.zh.LocaleNames_zh9fe6ae43bb7e10ff
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +Sessions

Sessions

This coverage report is based on execution data from the following sessions:

SessionStart TimeDump Time
jenkins-vh.gbif.org-d6d42f4c02-Feb-2024 09:28:0802-Feb-2024 09:28:14

Execution data for the following classes is considered in this report:

ClassId
ch.qos.logback.classic.BasicConfigurator0047a66eeae0d6b2
ch.qos.logback.classic.Levele2155b45608f35d7
ch.qos.logback.classic.Loggerf35d4d4ad6b0173a
ch.qos.logback.classic.LoggerContextd057ce3cea631d6b
ch.qos.logback.classic.layout.TTLLLayout17db39eb61acaa64
ch.qos.logback.classic.pattern.ClassicConverter78403f02659989af
ch.qos.logback.classic.pattern.ThrowableHandlingConverter266cc4ca75fcd39d
ch.qos.logback.classic.pattern.ThrowableProxyConverter46dc88ad0c97e462
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Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/jacoco.csv b/jacoco/jacoco.csv index 622ee1a1b0..446d74c7bc 100644 --- a/jacoco/jacoco.csv +++ b/jacoco/jacoco.csv @@ -60,7 +60,7 @@ GBIF Common :: API,org.gbif.api.util,ContactAdapter,180,0,30,0,40,0,27,0,12,0 GBIF Common :: API,org.gbif.api.util,RangeValue,30,39,8,8,7,11,11,2,4,1 GBIF Common :: API,org.gbif.api.util,ClassificationUtils,205,156,44,24,61,40,44,16,4,8 GBIF Common :: API,org.gbif.api.util,Range,29,89,5,17,7,13,4,16,1,8 -GBIF Common :: API,org.gbif.api.util,CitationGenerator,80,455,17,39,17,106,16,31,1,18 +GBIF Common :: API,org.gbif.api.util,CitationGenerator,83,505,20,44,18,117,19,37,1,23 GBIF Common :: API,org.gbif.api.util,LengthUtils,3,20,0,0,1,2,1,2,1,2 GBIF Common :: API,org.gbif.api.util,URIValidator,2,25,2,6,1,6,2,5,0,3 GBIF Common :: API,org.gbif.api.util,IdentifierUtils,41,56,12,11,11,12,9,9,2,3 @@ -274,7 +274,7 @@ GBIF Common :: API,org.gbif.api.model.registry,Tag,123,63,8,8,23,16,16,7,9,6 GBIF Common :: API,org.gbif.api.model.registry,Identifier,202,21,22,0,34,8,23,5,12,5 GBIF Common :: API,org.gbif.api.model.registry,Contact,750,222,82,20,126,50,82,24,41,14 GBIF Common :: API,org.gbif.api.model.registry,CountryOccurrenceDownloadUsage,160,0,24,0,4,0,23,0,11,0 -GBIF Common :: API,org.gbif.api.model.registry,Dataset,1429,356,134,22,220,94,151,40,73,40 +GBIF Common :: API,org.gbif.api.model.registry,Dataset,1423,362,134,22,218,96,150,41,72,41 GBIF Common :: API,org.gbif.api.model.registry,MachineTag,281,0,26,0,54,0,34,0,21,0 GBIF Common :: API,org.gbif.api.model.registry,Citation,99,50,6,6,17,11,12,5,6,5 GBIF Common :: API,org.gbif.api.model.registry,Comment,229,0,20,0,42,0,27,0,17,0 diff --git a/jacoco/jacoco.xml b/jacoco/jacoco.xml index 3006765d74..c9da273775 100644 --- a/jacoco/jacoco.xml +++ b/jacoco/jacoco.xml @@ -1 +1 @@ - \ No newline at end of file + \ No newline at end of file diff --git a/jacoco/org.gbif.api.model.registry/Dataset.html b/jacoco/org.gbif.api.model.registry/Dataset.html index 9469cc6fa5..cadb966407 100644 --- a/jacoco/org.gbif.api.model.registry/Dataset.html +++ b/jacoco/org.gbif.api.model.registry/Dataset.html @@ -1 +1 @@ -Dataset

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ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
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Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +Dataset

Dataset

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
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equals(Object)3300%1120%5757505011
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setLicense(License)100%n/a010201
setDoi(DOI)100%n/a010201
setType(DatasetType)100%n/a010201
setLanguage(Language)100%n/a010201
setHomepage(URI)100%n/a010201
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getVersion()100%n/a010101
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getDoi()100%n/a010101
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getCitation()100%n/a010101
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getModifiedBy()100%n/a010101
getContacts()100%n/a010101
getEndpoints()100%n/a010101
getMachineTags()100%n/a010101
getTags()100%n/a010101
getIdentifiers()100%n/a010101
getComments()100%n/a010101
getPubDate()100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.model.registry/Dataset.java.html b/jacoco/org.gbif.api.model.registry/Dataset.java.html index 4b60665e29..4bf3728ba7 100644 --- a/jacoco/org.gbif.api.model.registry/Dataset.java.html +++ b/jacoco/org.gbif.api.model.registry/Dataset.java.html @@ -855,8 +855,8 @@ @Override public void addEndpoint(Endpoint endpoint) { - endpoints.add(endpoint); - } + endpoints.add(endpoint); + } @Override public List<MachineTag> getMachineTags() { diff --git a/jacoco/org.gbif.api.model.registry/index.html b/jacoco/org.gbif.api.model.registry/index.html index 223921bc43..f617fad138 100644 --- a/jacoco/org.gbif.api.model.registry/index.html +++ b/jacoco/org.gbif.api.model.registry/index.html @@ -1 +1 @@ -org.gbif.api.model.registry

org.gbif.api.model.registry

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
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EndorsementStatus44100%n/a01050101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +org.gbif.api.model.registry

org.gbif.api.model.registry

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
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Dataset1,42336220%1342214%1501912183147211301
Organization1,03912410%1140%103132165207467501
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Tag1236333%8850%1623233991501
Citation995033%6650%1217172861101
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Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.model.registry/index.source.html b/jacoco/org.gbif.api.model.registry/index.source.html index d4166f3d60..38907a2d2f 100644 --- a/jacoco/org.gbif.api.model.registry/index.source.html +++ b/jacoco/org.gbif.api.model.registry/index.source.html @@ -1 +1 @@ -org.gbif.api.model.registry

org.gbif.api.model.registry

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total8,174 of 9,44213%858 of 9146%9121,0781,2651,591466621920
Dataset.java1,42935619%1342214%1511912203147311301
Organization.java1,03912410%1140%103132165207467501
Node.java94412411%860%91114149187487101
Network.java7899710%820%79100129160385901
Contact.java75022222%822019%82106126176415501
Installation.java6320%520%6969115115434311
DatasetOccurrenceDownloadUsage.java3750%640%53532727212111
Metadata.java3000%300%36365353212111
MachineTag.java2810%260%34345454212111
OrganizationOccurrenceDownloadUsage.java2460%400%353566151511
Comment.java2290%200%27274242171711
Endpoint.java20813138%320%35404361192401
CitationContact.java2033615%180%20263144111701
Identifier.java202219%220%23283442121701
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Grid.java1490%180%19192020101011
Tag.java1236333%8850%1623233991501
Citation.java995033%6650%1217172861101
ConfirmationKeyParameter.java160%n/a44774411
EndorsementStatus.java44100%n/a01050101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +org.gbif.api.model.registry

org.gbif.api.model.registry

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
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Dataset.java1,42336220%1342214%1501912183147211301
Organization.java1,03912410%1140%103132165207467501
Node.java94412411%860%91114149187487101
Network.java7899710%820%79100129160385901
Contact.java75022222%822019%82106126176415501
Installation.java6320%520%6969115115434311
DatasetOccurrenceDownloadUsage.java3750%640%53532727212111
Metadata.java3000%300%36365353212111
MachineTag.java2810%260%34345454212111
OrganizationOccurrenceDownloadUsage.java2460%400%353566151511
Comment.java2290%200%27274242171711
Endpoint.java20813138%320%35404361192401
CitationContact.java2033615%180%20263144111701
Identifier.java202219%220%23283442121701
CountryOccurrenceDownloadUsage.java1600%240%232344111111
Grid.java1490%180%19192020101011
Tag.java1236333%8850%1623233991501
Citation.java995033%6650%1217172861101
ConfirmationKeyParameter.java160%n/a44774411
EndorsementStatus.java44100%n/a01050101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/CitationGenerator$CitationData$CitationDataBuilder.html b/jacoco/org.gbif.api.util/CitationGenerator$CitationData$CitationDataBuilder.html index b7b6d86b95..92c413c7e5 100644 --- a/jacoco/org.gbif.api.util/CitationGenerator$CitationData$CitationDataBuilder.html +++ b/jacoco/org.gbif.api.util/CitationGenerator$CitationData$CitationDataBuilder.html @@ -1 +1 @@ -CitationGenerator.CitationData.CitationDataBuilder

CitationGenerator.CitationData.CitationDataBuilder

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total17 of 3855%0 of 0n/a150115
toString()170%n/a111111
build()8100%n/a010101
citation(Citation)5100%n/a010101
contacts(List)5100%n/a010101
CitationGenerator.CitationData.CitationDataBuilder()3100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +CitationGenerator.CitationData.CitationDataBuilder

CitationGenerator.CitationData.CitationDataBuilder

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total17 of 3855%0 of 0n/a150115
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citation(Citation)5100%n/a010101
contacts(List)5100%n/a010101
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Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/CitationGenerator$CitationData.html b/jacoco/org.gbif.api.util/CitationGenerator$CitationData.html index 199f9427e1..6bed9d952e 100644 --- a/jacoco/org.gbif.api.util/CitationGenerator$CitationData.html +++ b/jacoco/org.gbif.api.util/CitationGenerator$CitationData.html @@ -1 +1 @@ -CitationGenerator.CitationData

CitationGenerator.CitationData

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total109 of 12814%22 of 220%15191448
equals(Object)550%180%10101111
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CitationGenerator.CitationData(Citation, List)9100%n/a010101
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getCitation()3100%n/a010101
getContacts()3100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +CitationGenerator.CitationData

CitationGenerator.CitationData

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total109 of 12814%22 of 220%15191448
equals(Object)550%180%10101111
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CitationGenerator.CitationData(Citation, List)9100%n/a010101
builder()4100%n/a010101
getCitation()3100%n/a010101
getContacts()3100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/CitationGenerator.html b/jacoco/org.gbif.api.util/CitationGenerator.html index d4b254abfa..0cf90a141e 100644 --- a/jacoco/org.gbif.api.util/CitationGenerator.html +++ b/jacoco/org.gbif.api.util/CitationGenerator.html @@ -1 +1 @@ -CitationGenerator

CitationGenerator

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total80 of 53585%17 of 5669%164717123119
generatePublisherProvidedCitation(Dataset)700%40%33141411
generateCitation(Dataset, String)718096%31178%3823101
getAuthors(List)22291%2466%2411101
lambda$getAuthorName$8(String)685%1150%120101
getAuthorName(Contact)62100%1787%1501801
lambda$getUniqueAuthors$6(Predicate, List, Contact)61100%2880%2601701
generateAuthorsName(List)17100%1375%130601
lambda$findInAuthorList$7(Contact, CitationContact)16100%1375%130201
lambda$getUniqueAuthors$5(Contact, CitationContact)16100%1150%120401
static {...}16100%n/a010701
getUniqueAuthors(List, Predicate)13100%1150%120401
generateCitation(Dataset, Organization)9100%n/a010201
findInAuthorList(Contact, List)7100%n/a010301
lambda$getAuthorName$9(String)6100%n/a010101
lambda$getAuthors$3(Contact)6100%n/a010101
lambda$getAuthors$4(CitationContact)5100%n/a010101
lambda$static$2(Contact)5100%n/a010101
lambda$static$1(CitationContact)4100%n/a010101
lambda$static$0(Contact)4100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +CitationGenerator

CitationGenerator

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethods
Total83 of 58885%20 of 6468%195618135124
generatePublisherProvidedCitation(Dataset)700%40%33141411
generateCitation(Dataset, String)717996%31178%3823101
getAuthors(List)22291%2466%2411101
getAuthorsForCamtrap(List)2981%2250%231301
lambda$getAuthorName$11(String)685%1150%120101
lambda$getAuthors$4(EndpointType)685%1150%120101
getAuthorName(Contact)62100%1787%1501801
lambda$getUniqueAuthors$9(Predicate, List, Contact)61100%2880%2601701
static {...}23100%n/a0101001
getAuthors(Dataset)18100%2100%020401
generateAuthorsName(List)17100%1375%130601
lambda$findInAuthorList$10(Contact, CitationContact)16100%1375%130201
lambda$getUniqueAuthors$8(Contact, CitationContact)16100%1150%120401
getUniqueAuthors(List, Predicate)13100%1150%120401
generateCitation(Dataset, Organization)9100%n/a010201
findInAuthorList(Contact, List)7100%n/a010301
lambda$getAuthorName$12(String)6100%n/a010101
lambda$getAuthors$6(Contact)6100%n/a010101
lambda$getAuthorsForCamtrap$5(Contact)6100%n/a010101
lambda$getAuthors$7(CitationContact)5100%n/a010101
lambda$static$3(Contact)5100%n/a010101
lambda$static$2(Contact)5100%n/a010101
lambda$static$1(CitationContact)4100%n/a010101
lambda$static$0(Contact)4100%n/a010101
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/CitationGenerator.java.html b/jacoco/org.gbif.api.util/CitationGenerator.java.html index 14360362b4..c60cd6ddb2 100644 --- a/jacoco/org.gbif.api.util/CitationGenerator.java.html +++ b/jacoco/org.gbif.api.util/CitationGenerator.java.html @@ -17,6 +17,7 @@ import org.gbif.api.model.registry.CitationContact; import org.gbif.api.model.registry.Contact; import org.gbif.api.model.registry.Dataset; +import org.gbif.api.model.registry.Endpoint; import org.gbif.api.model.registry.Organization; import org.gbif.api.vocabulary.ContactType; @@ -41,6 +42,7 @@ import lombok.Builder; import lombok.Data; +import org.gbif.api.vocabulary.EndpointType; /** * Helper class tha generates a Citation String from {@link Dataset} and {@link Organization} @@ -48,24 +50,28 @@ */ public final class CitationGenerator { - private static final ZoneId UTC = ZoneId.of("UTC"); - private static final ContactType MANDATORY_CONTACT_TYPE = ContactType.ORIGINATOR; - private static final EnumSet<ContactType> AUTHOR_CONTACT_TYPE = - EnumSet.of(ContactType.ORIGINATOR, ContactType.METADATA_AUTHOR); - private static final Predicate<Contact> IS_NAME_PROVIDED_FCT = - ctc -> StringUtils.isNotBlank(ctc.getLastName()); - private static final Predicate<CitationContact> IS_CONTACT_NAME_PROVIDED = - ctc -> StringUtils.isNotBlank(ctc.getLastName()); - private static final Predicate<Contact> IS_ELIGIBLE_CONTACT_TYPE = - ctc -> AUTHOR_CONTACT_TYPE.contains(ctc.getType()); + private static final ZoneId UTC = ZoneId.of("UTC"); + private static final ContactType MANDATORY_CONTACT_TYPE = ContactType.ORIGINATOR; + private static final EnumSet<ContactType> AUTHOR_CONTACT_TYPE = + EnumSet.of(ContactType.ORIGINATOR, ContactType.METADATA_AUTHOR); + private static final EnumSet<ContactType> CAMTRAP_CITATION_CONTACT_TYPE = + EnumSet.of(ContactType.POINT_OF_CONTACT, ContactType.PRINCIPAL_INVESTIGATOR, ContactType.CONTENT_PROVIDER); + private static final Predicate<Contact> IS_NAME_PROVIDED_FCT = + ctc -> StringUtils.isNotBlank(ctc.getLastName()); + private static final Predicate<CitationContact> IS_CONTACT_NAME_PROVIDED = + ctc -> StringUtils.isNotBlank(ctc.getLastName()); + private static final Predicate<Contact> IS_ELIGIBLE_CONTACT_TYPE = + ctc -> AUTHOR_CONTACT_TYPE.contains(ctc.getType()); + private static final Predicate<Contact> IS_ELIGIBLE_CAMTRAP_CONTACT_TYPE = + ctc -> CAMTRAP_CITATION_CONTACT_TYPE.contains(ctc.getType()); /** Utility class */ private CitationGenerator() {} @SuppressWarnings("unused") public static CitationData generateCitation(Dataset dataset, Organization org) { - Objects.requireNonNull(org, "Organization shall be provided"); - return generateCitation(dataset, org.getTitle()); + Objects.requireNonNull(org, "Organization shall be provided"); + return generateCitation(dataset, org.getTitle()); } /** @@ -75,28 +81,28 @@ */ @SuppressWarnings("unused") public static String generatePublisherProvidedCitation(Dataset dataset) { - Objects.requireNonNull(dataset, "Dataset shall be provided"); - Objects.requireNonNull(dataset.getCitation(), "Dataset.citation shall be provided"); - String originalCitationText = dataset.getCitation().getText(); - Objects.requireNonNull(originalCitationText, "Dataset.citation.text shall be provided"); + Objects.requireNonNull(dataset, "Dataset shall be provided"); + Objects.requireNonNull(dataset.getCitation(), "Dataset.citation shall be provided"); + String originalCitationText = dataset.getCitation().getText(); + Objects.requireNonNull(originalCitationText, "Dataset.citation.text shall be provided"); - StringJoiner joiner = new StringJoiner(" "); + StringJoiner joiner = new StringJoiner(" "); - joiner.add(originalCitationText); + joiner.add(originalCitationText); // Check DOI exists, and append it if it doesn't. - if (!originalCitationText.toLowerCase().contains("doi.org") - && !originalCitationText.toLowerCase().contains("doi:")) { + if (!originalCitationText.toLowerCase().contains("doi.org") + && !originalCitationText.toLowerCase().contains("doi:")) { try { - joiner.add(URLDecoder.decode(dataset.getDoi().getUrl().toString(), "UTF-8")); - } catch (UnsupportedEncodingException e) { - throw new IllegalArgumentException("Couldn't decode DOI URL", e); - } + joiner.add(URLDecoder.decode(dataset.getDoi().getUrl().toString(), "UTF-8")); + } catch (UnsupportedEncodingException e) { + throw new IllegalArgumentException("Couldn't decode DOI URL", e); + } } - joiner.add("accessed via GBIF.org on " + LocalDate.now(UTC) + "."); + joiner.add("accessed via GBIF.org on " + LocalDate.now(UTC) + "."); - return joiner.toString(); + return joiner.toString(); } /** @@ -106,62 +112,79 @@ */ public static CitationData generateCitation(Dataset dataset, String organizationTitle) { - Objects.requireNonNull(dataset, "Dataset shall be provided"); - Objects.requireNonNull(organizationTitle, "Organization title shall be provided"); + Objects.requireNonNull(dataset, "Dataset shall be provided"); + Objects.requireNonNull(organizationTitle, "Organization title shall be provided"); - Citation citation = new Citation(); + Citation citation = new Citation(); - List<CitationContact> contacts = getAuthors(dataset.getContacts()); + List<CitationContact> contacts = getAuthors(dataset); - StringJoiner joiner = new StringJoiner(" "); - List<String> authorsName = generateAuthorsName(contacts); - String authors = String.join(", ", authorsName); + StringJoiner joiner = new StringJoiner(" "); + List<String> authorsName = generateAuthorsName(contacts); + String authors = String.join(", ", authorsName); - boolean authorsNameAvailable = StringUtils.isNotBlank(authors); - authors = authorsNameAvailable ? authors : organizationTitle; + boolean authorsNameAvailable = StringUtils.isNotBlank(authors); + authors = authorsNameAvailable ? authors : organizationTitle; // only add a dot if we are not going to add it with the year - authors += dataset.getPubDate() == null ? "." : ""; - joiner.add(authors); + authors += dataset.getPubDate() == null ? "." : ""; + joiner.add(authors); - if (dataset.getPubDate() != null) { - joiner.add("(" + dataset.getPubDate().toInstant().atZone(UTC).getYear() + ")."); + if (dataset.getPubDate() != null) { + joiner.add("(" + dataset.getPubDate().toInstant().atZone(UTC).getYear() + ")."); } // add title - joiner.add(StringUtils.trim(dataset.getTitle()) + "."); + joiner.add(StringUtils.trim(dataset.getTitle()) + "."); // add version - if (dataset.getVersion() != null) { - joiner.add("Version " + dataset.getVersion() + "."); + if (dataset.getVersion() != null) { + joiner.add("Version " + dataset.getVersion() + "."); } // add publisher except if it was used instead of the authors - if (authorsNameAvailable) { - joiner.add(StringUtils.trim(organizationTitle) + "."); + if (authorsNameAvailable) { + joiner.add(StringUtils.trim(organizationTitle) + "."); } - if (dataset.getType() != null) { - joiner.add(StringUtils.capitalize(dataset.getType().name().replace('_', ' ').toLowerCase())); + if (dataset.getType() != null) { + joiner.add(StringUtils.capitalize(dataset.getType().name().replace('_', ' ').toLowerCase())); } - joiner.add("dataset"); + joiner.add("dataset"); // add DOI as the identifier. - if (dataset.getDoi() != null) { + if (dataset.getDoi() != null) { try { - joiner.add( - URLDecoder.decode(dataset.getDoi().getUrl().toString(), StandardCharsets.UTF_8.name())); - } catch (UnsupportedEncodingException e) { - throw new IllegalArgumentException("Couldn't decode DOI URL", e); - } + joiner.add( + URLDecoder.decode(dataset.getDoi().getUrl().toString(), StandardCharsets.UTF_8.name())); + } catch (UnsupportedEncodingException e) { + throw new IllegalArgumentException("Couldn't decode DOI URL", e); + } } - joiner.add("accessed via GBIF.org on " + LocalDate.now(UTC) + "."); + joiner.add("accessed via GBIF.org on " + LocalDate.now(UTC) + "."); - citation.setText(joiner.toString()); - citation.setCitationProvidedBySource(false); + citation.setText(joiner.toString()); + citation.setCitationProvidedBySource(false); - return CitationData.builder().citation(citation).contacts(contacts).build(); + return CitationData.builder().citation(citation).contacts(contacts).build(); + } + + public static List<CitationContact> getAuthors(Dataset dataset) { + boolean isCamtrap = dataset.getEndpoints().stream() + .map(Endpoint::getType) + .anyMatch(e -> e == EndpointType.CAMTRAP_DP); + + return isCamtrap ? getAuthorsForCamtrap(dataset.getContacts()) : getAuthors(dataset.getContacts()); + } + + public static List<CitationContact> getAuthorsForCamtrap(List<Contact> contacts) { + if (contacts == null || contacts.isEmpty()) { + return Collections.emptyList(); + } + + return getUniqueAuthors( + contacts, ctc -> IS_NAME_PROVIDED_FCT.and(IS_ELIGIBLE_CAMTRAP_CONTACT_TYPE).test(ctc)); } /** @@ -173,24 +196,24 @@ * @return ordered list of authors or empty list, never null */ public static List<CitationContact> getAuthors(List<Contact> contacts) { - if (contacts == null || contacts.isEmpty()) { - return Collections.emptyList(); + if (contacts == null || contacts.isEmpty()) { + return Collections.emptyList(); } - List<CitationContact> uniqueContacts = - getUniqueAuthors( - contacts, ctc -> IS_NAME_PROVIDED_FCT.and(IS_ELIGIBLE_CONTACT_TYPE).test(ctc)); + List<CitationContact> uniqueContacts = + getUniqueAuthors( + contacts, ctc -> IS_NAME_PROVIDED_FCT.and(IS_ELIGIBLE_CONTACT_TYPE).test(ctc)); // make sure we have at least one instance of {@link #MANDATORY_CONTACT_TYPE} - Optional<CitationContact> firstOriginator = - uniqueContacts.stream() - .filter(ctc -> ctc.getRoles().contains(MANDATORY_CONTACT_TYPE)) - .findFirst(); + Optional<CitationContact> firstOriginator = + uniqueContacts.stream() + .filter(ctc -> ctc.getRoles().contains(MANDATORY_CONTACT_TYPE)) + .findFirst(); - if (firstOriginator.isPresent()) { - return uniqueContacts; + if (firstOriginator.isPresent()) { + return uniqueContacts; } - return Collections.emptyList(); + return Collections.emptyList(); } /** @@ -201,14 +224,14 @@ * @return list of author names (if it can be generated) or empty list, never null */ public static List<String> generateAuthorsName(List<CitationContact> authors) { - if (authors == null || authors.isEmpty()) { - return Collections.emptyList(); + if (authors == null || authors.isEmpty()) { + return Collections.emptyList(); } - return authors.stream() - .filter(IS_CONTACT_NAME_PROVIDED) - .map(CitationContact::getAbbreviatedName) - .collect(Collectors.toList()); + return authors.stream() + .filter(IS_CONTACT_NAME_PROVIDED) + .map(CitationContact::getAbbreviatedName) + .collect(Collectors.toList()); } /** @@ -223,42 +246,42 @@ */ private static List<CitationContact> getUniqueAuthors( List<Contact> authors, Predicate<Contact> filter) { - List<CitationContact> uniqueContact = new ArrayList<>(); - if (authors != null) { - authors.forEach( + List<CitationContact> uniqueContact = new ArrayList<>(); + if (authors != null) { + authors.forEach( ctc -> { - if (filter.test(ctc)) { - Optional<CitationContact> author = findInAuthorList(ctc, uniqueContact); - if (!author.isPresent()) { - HashSet<ContactType> contactTypes = new HashSet<>(); - if (ctc.getType() != null) { - contactTypes.add(ctc.getType()); + if (filter.test(ctc)) { + Optional<CitationContact> author = findInAuthorList(ctc, uniqueContact); + if (!author.isPresent()) { + HashSet<ContactType> contactTypes = new HashSet<>(); + if (ctc.getType() != null) { + contactTypes.add(ctc.getType()); } - HashSet<String> userIds = new HashSet<>(); - if (ctc.getUserId() != null && !ctc.getUserId().isEmpty()) { - userIds.addAll(ctc.getUserId()); + HashSet<String> userIds = new HashSet<>(); + if (ctc.getUserId() != null && !ctc.getUserId().isEmpty()) { + userIds.addAll(ctc.getUserId()); } - uniqueContact.add( + uniqueContact.add( new CitationContact( - ctc.getKey(), - getAuthorName(ctc), - ctc.getFirstName(), - ctc.getLastName(), + ctc.getKey(), + getAuthorName(ctc), + ctc.getFirstName(), + ctc.getLastName(), contactTypes, userIds)); - } else { - author.ifPresent( + } else { + author.ifPresent( a -> { - a.getRoles().add(ctc.getType()); - if (ctc.getUserId() != null) { - a.getUserId().addAll(ctc.getUserId()); + a.getRoles().add(ctc.getType()); + if (ctc.getUserId() != null) { + a.getUserId().addAll(ctc.getUserId()); } - }); + }); } } - }); + }); } - return uniqueContact; + return uniqueContact; } /** @@ -271,12 +294,12 @@ */ private static Optional<CitationContact> findInAuthorList( Contact ctc, List<CitationContact> uniqueContacts) { - return uniqueContacts.stream() - .filter( + return uniqueContacts.stream() + .filter( author -> - StringUtils.equalsIgnoreCase(ctc.getLastName(), author.getLastName()) - && StringUtils.equalsIgnoreCase(ctc.getFirstName(), author.getFirstName())) - .findFirst(); + StringUtils.equalsIgnoreCase(ctc.getLastName(), author.getLastName()) + && StringUtils.equalsIgnoreCase(ctc.getFirstName(), author.getFirstName())) + .findFirst(); } /** @@ -288,36 +311,36 @@ * @return name */ public static String getAuthorName(Contact creator) { - StringBuilder sb = new StringBuilder(); - String lastName = StringUtils.trimToNull(creator.getLastName()); - String firstNames = StringUtils.trimToNull(creator.getFirstName()); - String organization = StringUtils.trimToNull(creator.getOrganization()); - - if (lastName != null && firstNames != null) { - sb.append(lastName); - sb.append(" "); + StringBuilder sb = new StringBuilder(); + String lastName = StringUtils.trimToNull(creator.getLastName()); + String firstNames = StringUtils.trimToNull(creator.getFirstName()); + String organization = StringUtils.trimToNull(creator.getOrganization()); + + if (lastName != null && firstNames != null) { + sb.append(lastName); + sb.append(" "); // add first initial of each first name, capitalized - String[] names = firstNames.split("\\s+"); - - sb.append( - Arrays.stream(names) - .filter(str -> !StringUtils.isBlank(str)) - .map(str -> StringUtils.upperCase(String.valueOf(str.charAt(0)))) - .collect(Collectors.joining(" "))); - } else if (lastName != null) { - sb.append(lastName); - } else if (organization != null) { - sb.append(organization); + String[] names = firstNames.split("\\s+"); + + sb.append( + Arrays.stream(names) + .filter(str -> !StringUtils.isBlank(str)) + .map(str -> StringUtils.upperCase(String.valueOf(str.charAt(0)))) + .collect(Collectors.joining(" "))); + } else if (lastName != null) { + sb.append(lastName); + } else if (organization != null) { + sb.append(organization); } - return sb.toString(); + return sb.toString(); } - @Data - @Builder + @Data + @Builder public static class CitationData { - private final Citation citation; - private final List<CitationContact> contacts; + private final Citation citation; + private final List<CitationContact> contacts; } }
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/index.html b/jacoco/org.gbif.api.util/index.html index ddefb0a5c4..3d83933cfa 100644 --- a/jacoco/org.gbif.api.util/index.html +++ b/jacoco/org.gbif.api.util/index.html @@ -1 +1 @@ -org.gbif.api.util

org.gbif.api.util

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total1,262 of 3,73366%237 of 53755%22045124979751164321
MachineTagUtils2210%400%33334545131311
ClassificationUtils20515643%442435%44606110141201
ContactAdapter1800%300%27274040121211
SearchTypeValidator16656077%238378%22742416132101
CitationGenerator.CitationData1091914%220%1519144801
CitationGenerator8045585%173969%16471712311901
IsoDateParsingUtils7519372%122668%112614490701
IsoDateParsingUtils.IsoDateFormat4722882%71568%7207550601
IdentifierUtils415657%121147%91811232501
IsoDateInterval3127189%54389%83865931401
RangeValue303956%8850%11137184501
Range298975%51777%4207201901
CitationGenerator.CitationData.CitationDataBuilder172155%n/a15011501
LenientEqualsUtils130%60%44111111
PreconditionUtils1275%1375%14160201
VocabularyUtils12497%3975%3142270801
UnicodeUtils8096%4100%151271301
LengthUtils2086%n/a13131301
AnnotationUtils1178%n/a01250101
URIValidator2592%2675%27170301
DatasetKey112100%12100%0130230701
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +org.gbif.api.util

org.gbif.api.util

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total1,265 of 3,78666%240 of 54555%22346025080951169321
MachineTagUtils2210%400%33334545131311
ClassificationUtils20515643%442435%44606110141201
ContactAdapter1800%300%27274040121211
SearchTypeValidator16656077%238378%22742416132101
CitationGenerator.CitationData1091914%220%1519144801
CitationGenerator8350585%204468%19561813512401
IsoDateParsingUtils7519372%122668%112614490701
IsoDateParsingUtils.IsoDateFormat4722882%71568%7207550601
IdentifierUtils415657%121147%91811232501
IsoDateInterval3127189%54389%83865931401
RangeValue303956%8850%11137184501
Range298975%51777%4207201901
CitationGenerator.CitationData.CitationDataBuilder172155%n/a15011501
LenientEqualsUtils130%60%44111111
PreconditionUtils1275%1375%14160201
VocabularyUtils12497%3975%3142270801
UnicodeUtils8096%4100%151271301
LengthUtils2086%n/a13131301
AnnotationUtils1178%n/a01250101
URIValidator2592%2675%27170301
DatasetKey112100%12100%0130230701
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/jacoco/org.gbif.api.util/index.source.html b/jacoco/org.gbif.api.util/index.source.html index 3c604fa87d..2a01c84d82 100644 --- a/jacoco/org.gbif.api.util/index.source.html +++ b/jacoco/org.gbif.api.util/index.source.html @@ -1 +1 @@ -org.gbif.api.util

org.gbif.api.util

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total1,262 of 3,73366%237 of 53755%22045124979751164321
MachineTagUtils.java2210%400%33334545131311
CitationGenerator.java20649570%393950%32711812763203
ClassificationUtils.java20515643%442435%44606110141201
ContactAdapter.java1800%300%27274040121211
SearchTypeValidator.java16656077%238378%22742416132101
IsoDateParsingUtils.java12242177%194168%18462110401302
IdentifierUtils.java415657%121147%91811232501
IsoDateInterval.java3127189%54389%83865931401
RangeValue.java303956%8850%11137184501
Range.java298975%51777%4207201901
LenientEqualsUtils.java130%60%44111111
PreconditionUtils.java1275%1375%14160201
VocabularyUtils.java12497%3975%3142270801
UnicodeUtils.java8096%4100%151271301
LengthUtils.java2086%n/a13131301
AnnotationUtils.java1178%n/a01250101
URIValidator.java2592%2675%27170301
DatasetKey.java112100%12100%0130230701
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file +org.gbif.api.util

org.gbif.api.util

ElementMissed InstructionsCov.Missed BranchesCov.MissedCxtyMissedLinesMissedMethodsMissedClasses
Total1,265 of 3,78666%240 of 54555%22346025080951169321
MachineTagUtils.java2210%400%33334545131311
CitationGenerator.java20954572%424451%35801913963703
ClassificationUtils.java20515643%442435%44606110141201
ContactAdapter.java1800%300%27274040121211
SearchTypeValidator.java16656077%238378%22742416132101
IsoDateParsingUtils.java12242177%194168%18462110401302
IdentifierUtils.java415657%121147%91811232501
IsoDateInterval.java3127189%54389%83865931401
RangeValue.java303956%8850%11137184501
Range.java298975%51777%4207201901
LenientEqualsUtils.java130%60%44111111
PreconditionUtils.java1275%1375%14160201
VocabularyUtils.java12497%3975%3142270801
UnicodeUtils.java8096%4100%151271301
LengthUtils.java2086%n/a13131301
AnnotationUtils.java1178%n/a01250101
URIValidator.java2592%2675%27170301
DatasetKey.java112100%12100%0130230701
Created with JaCoCo 0.8.6.202009150832
\ No newline at end of file diff --git a/licenses.html b/licenses.html index fd8775ce27..1e04cd7eb1 100644 --- a/licenses.html +++ b/licenses.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Project Licenses
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • diff --git a/plugin-management.html b/plugin-management.html index e57aa560a9..0830105839 100644 --- a/plugin-management.html +++ b/plugin-management.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Project Plugin Management
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • diff --git a/plugins.html b/plugins.html index 8a9eeaaece..c6bc2f799a 100644 --- a/plugins.html +++ b/plugins.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Project Plugins
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • diff --git a/project-info.html b/project-info.html index af2c3a1e21..ac736a56e0 100644 --- a/project-info.html +++ b/project-info.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Project Information
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • diff --git a/project-reports.html b/project-reports.html index f28baa1567..50c90939e9 100644 --- a/project-reports.html +++ b/project-reports.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Generated Reports
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • diff --git a/scm.html b/scm.html index b11f46ffe8..647ec7c638 100644 --- a/scm.html +++ b/scm.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Source Code Management
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • @@ -77,10 +77,10 @@

    Web Browser Access

    https://github.com/gbif/gbif-api

    Anonymous Access

    The source can be checked out anonymously from Git with this command (See https://git-scm.com/docs/git-clone):

    -
    $ git clone --branch gbif-api-1.13.1 git@github.com:gbif/gbif-api.git
    +
    $ git clone --branch gbif-api-1.13.2 git@github.com:gbif/gbif-api.git

    Developer Access

    Only project developers can access the Git tree via this method (See https://git-scm.com/docs/git-clone).

    -
    $ git clone --branch gbif-api-1.13.1 git@github.com:gbif/gbif-api.git
    +
    $ git clone --branch gbif-api-1.13.2 git@github.com:gbif/gbif-api.git

    Access from Behind a Firewall

    Refer to the documentation of the SCM used for more information about access behind a firewall.

    diff --git a/summary.html b/summary.html index 5aa238905a..62a8e22bbb 100644 --- a/summary.html +++ b/summary.html @@ -1,6 +1,6 @@ @@ -28,8 +28,8 @@
  • GBIF/
  • GBIF Common :: API/
  • Project Summary
    • -
  • | Last Published: 2024-02-01
    • -
  • Version: 1.13.1
    • +
  • | Last Published: 2024-02-02
    • +
  • Version: 1.13.2
    • @@ -109,7 +109,7 @@

    Build Information

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