1.1.19 release

Full Changelog: v1.1.18...v1.1.19

Bump minimal versions to Python 3.8, PyTorch 2.0.1, Pyro 1.8.5

1.1.18 release

New Features

• Save dwelltime intervals in matlab format by @ordabayevy in #417

Optimizations

• Optimize data fetching by @ordabayevy in #421

Other Changes

• Rerun the new version of black on the repo by @ordabayevy in #418
• Add compute_params method by @ordabayevy in #419

Full Changelog: v1.1.17...v1.1.18

1.1.17 release

What's Changed

• Make dwelltime analysis faster by @ordabayevy in #413

Full Changelog: v1.1.16...v1.1.17

1.1.16 release

What's Changed

• Fix dwelltime analysis for comsos+hmm model output by @ordabayevy in #409
• Add cumulative to axis label by @ordabayevy in #410
• Fix ttb bug by @ordabayevy in #411

Full Changelog: v1.1.15...v1.1.16

1.1.15 release

What's Changed

• Update windows.rst by @gelles-brandeis in #400
• Save time intervals by @ordabayevy in #403
• Add dye color labels in the GUI by @ordabayevy in #404
• Exclude masked AOIs from post analyses and rastergram plots by @ordabayevy in #405
• Rename dwell-time analysis output files by @ordabayevy in #406
• Option to run post-analysis either on GPU or CPU by @ordabayevy in #407

Full Changelog: v1.1.14...v1.1.15

1.1.14 release

This release fixes CUDA related bugs that were not completely fixed in the previous release

Please update to this version of Tapqir to fix CUDA related problems on your system.

What's Changed

• Fix fetch device by @ordabayevy in #399

Full Changelog: v1.1.13...v1.1.14

1.1.13 release

This release fixes the error associated with the CUDA observed in recent installations of Tapqir

• Fix GPU error by @ordabayevy in #398

Full Changelog: v1.1.12...v1.1.13

1.1.12 release

What's Changed

• Update info.rst by @gelles-brandeis in #389
• Fix colab progressbar in post analysis by @ordabayevy in #394

Full Changelog: v1.1.11...v1.1.12

1.1.11 release

What's Changed

• Fix glimpse view multiple color channels by @ordabayevy in #388
• Update colab.rst by @gelles-brandeis in #390
• Edit Colab tutorial by @ordabayevy in #391
• move colab tutorial by @ordabayevy in #392

Full Changelog: v1.1.10...v1.1.11

1.1.10 release

What's Changed

• Fix output filenames by @ordabayevy in #380
• SNR per channel by @ordabayevy in #381
• Add progress bar to ttfb and dwelltime commands by @ordabayevy in #382
• Dwelltime progress bar by @ordabayevy in #383
• Save time-to-first-binding data points by @ordabayevy in #384

Incompatibility with previous versions

If you already analyzed data with previous versions of Tapqir then rename the saved model checkpoint file (which is under .tapqir folder) from {model name}-model.tpqr to {model name}_model.tpqr (change dash to underscore).

Full Changelog: v1.1.9...v1.1.10