1.1.9 release

What's Changed

• Fix pi_mean tensorboard bug by @ordabayevy in #373
• Fix colab run bug by @ordabayevy in #375

Full Changelog: v1.1.8...v1.1.9

1.1.8 release

Full Changelog: v1.1.7...v1.1.8

• Pin matplotlib version to >=3.5.3

1.1.7 release

What's Changed

• Save rastergram by @ordabayevy in #365
• save ttfb fit data by @ordabayevy in #366
• GUI for number of spot states by @ordabayevy in #367
• Bug fixes by @ordabayevy in #368
• torch version >=1.11.0

Full Changelog: v1.1.6...v1.1.7

1.1.6 release

What's Changed

• Clarify theta_probs description by @ordabayevy in #360
• Multi state HMM by @ordabayevy in #357
• Post analysis GUI by @ordabayevy in #361
• Binary rastergram option in ttfb command by @ordabayevy in #362
• z_sample method by @ordabayevy in #363
• ttfb gui by @ordabayevy in #364

Full Changelog: v1.1.5...v1.1.6

1.1.5 release

What's Changed

• dwelltime command by @ordabayevy in #356

Full Changelog: v1.1.4...v1.1.5

1.1.4 release

What's Changed

• Fix cosmos+hmm by @ordabayevy in #353
• cosmos+hmm dependencies by @ordabayevy in #355

Full Changelog: v1.1.3...v1.1.4

v1.1.3

What's Changed

• Fix crosstalk model and add it to unit tests by @ordabayevy in #341
• Fix avail models by @ordabayevy in #342
• Update installation instructions by @ordabayevy in #344
• Fix gui by @ordabayevy in #345
• Fix compute_probs in hmm by @ordabayevy in #346
• Fix _sequential_logmatmulexp by @ordabayevy in #348
• Bump pyro version to 1.8.2 by @ordabayevy in #349
• Add subset command by @ordabayevy in #350
• Add ttfb command by @ordabayevy in #351

Full Changelog: v1.1.2...v1.1.3

1.1.2 release

Bug fix

• Fixes KeyError bug produced during checking the convergence criteria by @ordabayevy in #340

Full Changelog: v1.1.1...v1.1.2

1.1.1 release

Enhancement

• cosmos model with Markov dependency by @ordabayevy in #336

Bug fixes

• Fix nonspecific toggle bug by @ordabayevy in #334
• Fix crosstalk model by @ordabayevy in #337
• Bug fix. Remove channels option from the fit gui by @ordabayevy in #338

Full Changelog: v1.1.0...v1.1.1

1.1.0 release

Breaking

• instead of specifying channel number to be analyzed now all color channels in the data are analyzed using multi-color cosmos models (see below)
• to analyze only a single color channel create a new folder and extract AOIs only for that particular color channel and then perform the analysis
• channels-xxx suffix was dropped from model and parameter files names
• model file and parameter file contents are not backward compatible

New

• cosmos model now supports multiple color channel analysis by @ordabayevy in #333
• EXPERIMENTAL: multi-color cosmos model with crosstalk between channels by @ordabayevy in #275

Full Changelog: v1.0.5...v1.1.0