From 25dd3d5782f5e439b2bd0cca88e1fc0216ddb603 Mon Sep 17 00:00:00 2001
From: Sebastian Schoenherr <sebastian.schoenherr@i-med.ac.at>
Date: Fri, 26 Mar 2021 09:44:47 +0100
Subject: [PATCH] Prepare pre-release 1.5.8

---
 files/imputationserver-beagle.yaml                              | 2 +-
 files/imputationserver-hla.yaml                                 | 2 +-
 files/imputationserver-pgs.yaml                                 | 2 +-
 files/minimac4.yaml                                             | 2 +-
 pom.xml                                                         | 2 +-
 .../imputationserver/steps/imputation/ImputationPipeline.java   | 2 +-
 6 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/files/imputationserver-beagle.yaml b/files/imputationserver-beagle.yaml
index 5b935f4e..9f6ad520 100644
--- a/files/imputationserver-beagle.yaml
+++ b/files/imputationserver-beagle.yaml
@@ -1,7 +1,7 @@
 id: imputationserver-beagle
 name: Genotype Imputation supporting Beagle (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.5.7
+version: 1.5.8
 website: https://imputationserver.readthedocs.io
 category:
 
diff --git a/files/imputationserver-hla.yaml b/files/imputationserver-hla.yaml
index e5f19bbb..64a14846 100644
--- a/files/imputationserver-hla.yaml
+++ b/files/imputationserver-hla.yaml
@@ -1,7 +1,7 @@
 id: imputationserver-hla
 name: Genotype Imputation HLA (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.5.7
+version: 1.5.8
 website: https://imputationserver.readthedocs.io
 category:
 
diff --git a/files/imputationserver-pgs.yaml b/files/imputationserver-pgs.yaml
index 9805a713..93f34f85 100644
--- a/files/imputationserver-pgs.yaml
+++ b/files/imputationserver-pgs.yaml
@@ -1,7 +1,7 @@
 id: imputationserver-pgs
 name: Genotype Imputation (PGS Calc Integration)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.5.7
+version: 1.5.8
 website: https://imputationserver.readthedocs.io
 category:
 
diff --git a/files/minimac4.yaml b/files/minimac4.yaml
index 3c03b892..ba92c8a2 100644
--- a/files/minimac4.yaml
+++ b/files/minimac4.yaml
@@ -1,7 +1,7 @@
 id: imputationserver
 name: Genotype Imputation (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 1.5.7
+version: 1.5.8
 website: https://imputationserver.readthedocs.io
 category:
 
diff --git a/pom.xml b/pom.xml
index 0c1dd215..cda44bd5 100644
--- a/pom.xml
+++ b/pom.xml
@@ -5,7 +5,7 @@
 
 	<groupId>genepi</groupId>
 	<artifactId>imputationserver</artifactId>
-	<version>1.5.7</version>
+	<version>1.5.8</version>
 	<packaging>jar</packaging>
 
 	<name>University of Michigan Imputation Server</name>
diff --git a/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java b/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
index 80b33fe6..e43b6a89 100644
--- a/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
+++ b/src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
@@ -23,7 +23,7 @@
 
 public class ImputationPipeline {
 
-	public static final String PIPELINE_VERSION = "michigan-imputationserver-1.5.7";
+	public static final String PIPELINE_VERSION = "michigan-imputationserver-1.5.8";
 
 	public static final String IMPUTATION_VERSION = "minimac4-1.0.2";