ci.yml

name: CI

on:
  push:
    branches:
      - master
    tags:
      - "[0-9]+.[0-9]+.[0-9]+*"
  pull_request:
    branches:
      - master
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.head_ref || github.ref_name }}
  cancel-in-progress: true

jobs:
  test:
    runs-on: arc-runner

    env:
      RESOLWE_POSTGRESQL_PORT: 55433
      RESOLWE_REDIS_PORT: 56380
      RESOLWE_TEST_ONLY_CHANGES_TO: "origin/master"
    strategy:
      matrix:
        toxenv: ["py312"]

    services:
      postgres:
        image: public.ecr.aws/docker/library/postgres:16
        ports:
          - 55433:5432
        env:
          POSTGRES_USER: resolwe
          POSTGRES_DB: resolwe-bio
          POSTGRES_HOST_AUTH_METHOD: trust
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

      redis:
        image: public.ecr.aws/docker/library/redis:7-alpine
        ports:
          - 56380:6379
        options: >-
          --health-cmd "redis-cli ping"
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    steps:
      - name: Checkout
        uses: actions/checkout@v4
        with:
          lfs: true
          fetch-depth: 0

      # NOTE: If we are building the "master" branch or a pull request against the
      # "master" branch, we allow installing pre-releases with the pip command.
      - name: Allow pre-releases for master branch
        if: github.ref == 'refs/heads/master'
        run: echo "PIP_PRE=1" >> $GITHUB_ENV

      - name: Assert PR is up-to-date
        if: github.event_name == 'pull_request'
        run: |
          git_change_target_merge_base=$(git merge-base HEAD origin/${{ github.base_ref }})
          git_change_target_sha=$(git rev-parse origin/${{ github.base_ref }})

          if [[ "${git_change_target_merge_base}" != "${git_change_target_sha}" ]]; then
            echo "Pull request is not up-to-date!"
            echo "Please, rebase your pull request on top of '${{ github.base_ref }}' (commit: ${git_change_target_sha})."
            exit 1
          fi

      - name: Documentation
        run: |
          tox -e docs

      - name: Linters
        run: |
          tox -e linters

      - name: Packaging
        run: |
          tox -e packaging

      - name: Extras
        run: |
          tox -e extra

      - name: Migrations
        run: |
          tox -e migrations

      - name: List files in the checkout directory
        if: always()
        run: |
          ls -a -R ${{ github.workspace }}/tests/

      - name: Run entire test suite
        if: github.event_name != 'pull_request'
        timeout-minutes: 120
        run: |
          tox -e ${{ matrix.toxenv }}

      - name: Unit partial test suite on pull request
        if: github.event_name == 'pull_request'
        timeout-minutes: 120
        run: |
          tox -e ${{ matrix.toxenv }}-partial

      - name: List files in the checkout directory
        if: always()
        run: |
          ls -a -R ${{ github.workspace }}/tests/

      - name: Upload artifacts
        if: always()
        uses: actions/upload-artifact@v4
        with:
          path: ${{ github.workspace }}/tests/.test_data/*
          retention-days: 1
          name: test_files
          include-hidden-files: true

  build:
    runs-on: arc-runner
    needs: test

    permissions:
      id-token: write
      contents: read

    if: startsWith(github.ref, 'refs/tags')

    steps:
      - uses: actions/checkout@v4

      - name: Install build
        run: python3.12 -m pip install --user build

      - name: Build a binary wheel and a source tarball
        run: python3.12 -m build --sdist --wheel --outdir dist/ .

      - name: Publish distribution to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1