From 464c79e722c8968ffc56d545bb2409a20c45991a Mon Sep 17 00:00:00 2001 From: genomewalker Date: Tue, 19 Nov 2024 07:00:30 +0100 Subject: [PATCH] Minor --- bam_filter/filter.py | 1 - bam_filter/lca.py | 2 +- bam_filter/reassign.py | 2 +- 3 files changed, 2 insertions(+), 3 deletions(-) diff --git a/bam_filter/filter.py b/bam_filter/filter.py index 53171b7..141dac9 100644 --- a/bam_filter/filter.py +++ b/bam_filter/filter.py @@ -14,7 +14,6 @@ import logging import pandas as pd -# from bam_filter.sam_utils import process_bam, filter_reference_BAM, check_bam_file # Import BAM utilities from bam_filter.bam_utils import ( check_bam_file, diff --git a/bam_filter/lca.py b/bam_filter/lca.py index 2d334fd..b4942a9 100644 --- a/bam_filter/lca.py +++ b/bam_filter/lca.py @@ -15,7 +15,7 @@ create_output_files, create_empty_output_files, ) -from bam_filter.sam_utils import check_bam_file +from bam_filter.bam_utils import check_bam_file from collections import defaultdict from functools import reduce import operator diff --git a/bam_filter/reassign.py b/bam_filter/reassign.py index 15e58cb..d29cc33 100644 --- a/bam_filter/reassign.py +++ b/bam_filter/reassign.py @@ -23,7 +23,7 @@ import concurrent.futures import math import warnings -from bam_filter.sam_utils import check_bam_file +from bam_filter.bam_utils import check_bam_file import shutil import uuid import psutil