From 3992f16a5032023278700168986981dd8febc4e2 Mon Sep 17 00:00:00 2001
From: Katja Stojkovic <46970419+Emkago@users.noreply.github.com>
Date: Wed, 29 Jan 2025 17:58:40 +0100
Subject: [PATCH] Update nextflow.ngp.config

---
 configs/nextflow.ngp.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/configs/nextflow.ngp.config b/configs/nextflow.ngp.config
index 253b1783..99ed6c97 100644
--- a/configs/nextflow.ngp.config
+++ b/configs/nextflow.ngp.config
@@ -266,7 +266,7 @@ process {
 		memory = '32.GB'
 		time=2.h
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/medaka", mode: 'copy', overwrite: true ]
-		ext.args = "--threads 40 -m r941_min_sup_g507"
+		ext.args = "-t 40 -m r941_min_sup_g507"
 	}
 	withName: mlst {
 		container = "${params.containerDir}/mlst.sif"