Problem running test

[thierryjanssens]

After installing NanoRTax according to the instructions, I fail to run the test with the test profile.
There seems to be lacking someting in main.nf:

Missing workflow definition - DSL2 requires at least a workflow block in the main script

Please find the verbose output below.

with kind regards,

Thierry

$ nextflow run main.nf -profile test,docker N E X T F L O W ~ version 22.04.0
Launching main.nf [serene_davinci] DSL2 - revision: 5faf521cd0
WARN: Access to undefined parameter multiqc_config -- Initialise it to a default value eg. params.multiqc_config = some_value
WARN: Access to undefined parameter reads_rt -- Initialise it to a default value eg. params.reads_rt = some_value

                                    ,--./,-.
    ___     __   __   __   ___     /,-._.--~'

|\ | |__ __ / / \ |__) |__ } { | \| | \__, \__/ | \ |___ \-.,--, .,._,'
nf-core/rtnanopipeline v1.0dev

Run Name : test-run-32-noBLAST
Reads : /media/minion/Data/Data_analyses/NanoRtax/NanoRTax/test_data/minimock.fastq
Max Resources : 128 GB memory, 16 cpus, 10d time per job
Container : docker - hecrp/nanortax:latest
Output dir : ./results
Launch dir : /media/minion/Data/Data_analyses/NanoRtax/NanoRTax
Working dir : /media/minion/Data/Data_analyses/NanoRtax/NanoRTax/work
Script dir : /media/minion/Data/Data_analyses/NanoRtax/NanoRTax
User : minion
Config Profile : test,docker

WARN: Access to undefined parameter hostnames -- Initialise it to a default value eg. params.hostnames = some_value
Missing workflow definition - DSL2 requires at least a workflow block in the main script