diff --git a/.coveragerc b/.coveragerc deleted file mode 100644 index f6108420..00000000 --- a/.coveragerc +++ /dev/null @@ -1,5 +0,0 @@ -[run] -branch = True -source = - djangoapp \ - padoa diff --git a/.dockerignore b/.dockerignore index c3ad29ef..de54d7a5 100644 --- a/.dockerignore +++ b/.dockerignore @@ -1,3 +1,4 @@ .env +.venv tileserver diff --git a/Dockerfile b/Dockerfile deleted file mode 100644 index 45c84551..00000000 --- a/Dockerfile +++ /dev/null @@ -1,80 +0,0 @@ -FROM python:3.10 - -ENV DJANGO_PROJECT_NAME djangoapp -ENV WORK_DIR /opt/api -ENV DJANGO_HOME $WORK_DIR/app -ENV BIND_HOST 0.0.0.0 -ENV PORT 8000 - -ENV PYTHONUNBUFFERED 1 -ENV DJANGO_SETTINGS_MODULE $DJANGO_PROJECT_NAME.settings -ENV ASGI_APPLICATION $DJANGO_PROJECT_NAME.asgi.application -ENV WSGI_APPLICATION $DJANGO_PROJECT_NAME.routing.application - -ENV CELERYD_PID_FILE $DJANGO_HOME/daemons/celery.pid -ENV CELERYBEAT_PID_FILE $DJANGO_HOME/daemons/celery.beat.pid -ENV CELERYBEAT_SCHEDULE_FILE $DJANGO_HOME/daemons/celerybeat-schedule -ENV CELERYD_LOG_LEVEL INFO -ENV CELERYD_LOG_FILE $DJANGO_HOME/daemons/celery.log -ENV CELERYD_TIMELIMIT 7200 -ENV CELERYD_CONCURRENCY 1 - -ENV GUNICORN_LOG_LEVEL info -ENV GUNICORN_LOG_FILE - -ENV GUNICORN_ACCESS_LOG_FILE - -ENV GUNICORN_WORKERS 5 - -ENV CHANNEL_WORKER_THREADS 2 - -# Install dependencies -RUN apt-get update \ - && apt-get install -y --no-install-recommends \ - jq gdal-bin apt-utils libgdal-dev sqlite3 - -# Install proj 7 (mimimum supported version by pyproj is 6.2.0 - Buster provides 5.2.0 - -RUN cd /tmp && \ - wget https://github.com/OSGeo/PROJ/releases/download/9.1.0/proj-9.1.0.tar.gz && \ - tar -xf proj-9.1.0.tar.gz && \ - cd proj-9.1.0 && apt install cmake -y && mkdir build && cd build && cmake .. && cmake --build . && cmake --build . --target install - -# create folders and set properties -RUN mkdir $WORK_DIR \ - && mkdir $DJANGO_HOME \ - && mkdir $DJANGO_HOME/storage \ - && mkdir $DJANGO_HOME/static - -# Add django entrypoint -ADD docker/backend/docker-entrypoint.sh $WORK_DIR/docker-entrypoint.sh -RUN chmod +x ${WORK_DIR}/docker-entrypoint.sh -ADD check_db.py $WORK_DIR/check_db.py -RUN chmod +x ${WORK_DIR}/check_db.py - -# install python dependencies -ADD docker/backend/project_requirements.txt $WORK_DIR/project_requirements.txt -ENV PIP_DEFAULT_TIMEOUT=100 -RUN apt install -y postgresql-client && pip install --upgrade pip && pip install -r $WORK_DIR/project_requirements.txt && chmod +x $WORK_DIR/docker-entrypoint.sh -# copy default django folder - -COPY backend $DJANGO_HOME -# correct file and folder permissionsok -RUN find $DJANGO_HOME -type f | xargs chmod -v 644 \ - && find $DJANGO_HOME -type d | xargs chmod -v 755 \ - && chmod -R 777 $DJANGO_HOME/storage \ - && chmod +x $DJANGO_HOME/manage.py - -# set workdir -WORKDIR $DJANGO_HOME - -#set user -#USER $DJANGO_PROJECT_NAME - -# expose port -EXPOSE $PORT - -ENTRYPOINT ["../docker-entrypoint.sh"] -# Run daphne -CMD ["daphne"] - - - diff --git a/backend/djangoapp/settings.py b/backend/djangoapp/settings.py index 552651f9..460444d5 100644 --- a/backend/djangoapp/settings.py +++ b/backend/djangoapp/settings.py @@ -99,7 +99,7 @@ ] WSGI_APPLICATION = os.environ.get('WSGI_APPLICATION', 'djangoapp.wsgi.application') -ASGI_APPLICATION = os.environ.get('ASGI_APPLICATION', 'djangoapp.asgi.channel_layer') +ASGI_APPLICATION = os.environ.get('ASGI_APPLICATION', 'djangoapp.asgi.app') # Database # https://docs.djangoproject.com/en/1.10/ref/settings/#databases diff --git a/check_db.py b/check_db.py deleted file mode 100644 index 464c2774..00000000 --- a/check_db.py +++ /dev/null @@ -1,28 +0,0 @@ -import socket -import time -import argparse -""" Check if port is open, avoid docker-compose race condition """ - -parser = argparse.ArgumentParser(description='Check if port is open, avoid\ - docker-compose race condition') -parser.add_argument('--service-name', required=True) -parser.add_argument('--ip', required=True) -parser.add_argument('--port', required=True) - -args = parser.parse_args() - -# Get arguments -service_name = str(args.service_name) -port = int(args.port) -ip = str(args.ip) - -# Infinite loop -while True: - sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM) - result = sock.connect_ex((ip, port)) - if result == 0: - print("{0} port is open! Bye!".format(service_name)) - break - else: - print("{0} port is not open! I'll check it soon!".format(service_name)) - time.sleep(3) \ No newline at end of file diff --git a/docker-compose.yml b/docker-compose.yml index 815e11aa..aaa3ecc1 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -26,29 +26,19 @@ services: backend: env_file: .env container_name: backend.api - image: padoa_backend - build: . - command: ${API_COMMAND:-dev} + image: "ghcr.io/geobeyond/arpav_ppcv_backend:${CURRENT_GIT_BRANCH:-latest}" restart: unless-stopped - # user: ${UID:-1000} environment: GUNICORN_WORKERS: 15 GUNICORN_WORKER_TIMEOUT: 120 - expose: - - 8000 # ports: # - 8000:8000 depends_on: - postgis -# - proxy volumes: - - ./backend/djangoapp:/opt/api/app/djangoapp - - ./backend/padoa:/opt/api/app/padoa - - ./backend/storage:/opt/api/app/storage - - ./backend/resources:/opt/api/app/resources - - ./backend/templates:/opt/api/app/templates - - ./docker/backend/docker-entrypoint.sh:/opt/api/docker-entrypoint.sh - - .env:/opt/api/app/.env + - type: bind + source: $PWD + target: /home/appuser/app martin: image: 'maplibre/martin:v0.6' @@ -76,11 +66,11 @@ services: - 80 - 443 ports: - - 80:80 - - 443:443 + - 8000:80 + - 4430:443 environment: - NGINX_HOST=proxy - - NGINX_PORT=80 + - NGINX_PORT=8000 depends_on: - backend - thredds @@ -98,14 +88,14 @@ services: environment: - THREDDS_PASSWORD=${THREDDS_PASSWORD} - frontend: - container_name: frontend - image: ppcv_frontend:latest - build: - context: ./Arpav-PPCV - expose: - - 80 - restart: always +# frontend: +# container_name: frontend +# image: ppcv_frontend:latest +# build: +# context: ./Arpav-PPCV +# expose: +# - 80 +# restart: always volumes: redisdata: diff --git a/docker/Dockerfile b/docker/Dockerfile new file mode 100644 index 00000000..c2ce0a38 --- /dev/null +++ b/docker/Dockerfile @@ -0,0 +1,59 @@ +FROM python:3.10 + +# Install dependencies +RUN apt-get update \ + && apt-get install -y --no-install-recommends \ + curl \ + gdal-bin \ + apt-utils \ + libgdal-dev \ + tini + +# download poetry +RUN curl --silent --show-error --location \ + https://install.python-poetry.org > /opt/install-poetry.py + +# Create a normal non-root user so that we can use it to run +RUN useradd --create-home appuser + +# Compile python stuff to bytecode to improve startup times +RUN python -c "import compileall; compileall.compile_path(maxlevels=10)" + +USER appuser + +# create relevant directories and install poetry +RUN mkdir /home/appuser/app && \ + mkdir /home/appuser/data && \ + python opt/install-poetry.py --yes --version 1.7.1 + +ENV PATH="$PATH:/home/appuser/.local/bin" \ + PYTHONUNBUFFERED=1 \ + # This allows us to get traces whenever some C code segfaults + PYTHONFAULTHANDLER=1 + +WORKDIR /home/appuser/app + +COPY --chown=appuser:appuser pyproject.toml poetry.lock ./ + +RUN poetry install --no-root --only main + +EXPOSE 8000 + +ARG GIT_COMMIT +ENV GIT_COMMIT=$GIT_COMMIT \ + DJANGO_SETTINGS_MODULE=djangoapp.settings + +# Now install our code +COPY --chown=appuser:appuser . . +RUN poetry install --only main + +# Write git commit identifier into the image +RUN echo $GIT_COMMIT > /home/appuser/git-commit.txt + +# Compile python stuff to bytecode to improve startup times +RUN poetry run python -c "import compileall; compileall.compile_path(maxlevels=10)" + +# use tini as the init process +ENTRYPOINT ["tini", "-g", "--", "poetry", "run", "django-admin"] + +CMD ["runserver", "0.0.0.0:8000"] diff --git a/docker/backend/docker-entrypoint.sh b/docker/backend/docker-entrypoint.sh deleted file mode 100644 index 7a6a1b24..00000000 --- a/docker/backend/docker-entrypoint.sh +++ /dev/null @@ -1,153 +0,0 @@ -#!/bin/bash - -# Exit immediately if a command exits with a non-zero status. -# http://stackoverflow.com/questions/19622198/what-does-set-e-mean-in-a-bash-script -set -e -# Check if the required PostgreSQL environment variables are set - -# Used by docker-entrypoint.sh to start the dev server -# If not configured you'll receive this: CommandError: "0.0.0.0:" is not a valid port number or address:port pair. -#[ -z "$PORT" ] && echo "ERROR: Need to set PORT. E.g.: 8000" && exit 1; - -#[ -z "$POSTGRES_DB_NAME" ] && echo "ERROR: Need to set POSTGRES_DB_NAME" && exit 1; -#[ -z "$POSTGRES_USER" ] && echo "ERROR: Need to set POSTGRES_USER" && exit 1; -#[ -z "$PGPASSWORD" ] && echo "ERROR: Need to set POSTGRES_PASSWORD" && exit 1; - - -# Define help message -show_help() { - echo """ - Usage: docker run COMMAND - Commands - dev : Start a normal Django development server - bash : Start a bash shell - manage : Start manage.py - setup_db : Setup the initial database. Configure \$POSTGRES_DB_NAME in docker-compose.yml - pip : Run pip - lint : Run pylint - python : Run a python command - shell : Start a Django Python shell - uwsgi : Run uwsgi server - help : Show this message - """ -} - -write_uwsgi() { - echo "Generating uwsgi config file..." - snippet="import os; - import sys; - import jinja2; - sys.stdout.write(jinja2.Template(sys.stdin.read()).render(env=os.environ))" - - cat /deployment/uwsgi.ini | python -c "${snippet}" > /uwsgi.ini -} - -# Run -until ls $DJANGO_HOME -do - echo "Waiting for django volume..." -done - -if [ ! -f $DJANGO_HOME/.env ]; then - touch $DJANGO_HOME/.env -fi - -if [ ! -d $DJANGO_HOME/storage ]; then - mkdir $DJANGO_HOME/storage -fi - -if [ ! -d $DJANGO_HOME/static ]; then - mkdir $DJANGO_HOME/static -fi - -#echo "fix file and folder permissions" -#find $DJANGO_HOME -type f | xargs chmod -v 644 -#find $DJANGO_HOME -type d | xargs chmod -v 755 -#chmod -R 777 $DJANGO_HOME/storage -#chmod +x $DJANGO_HOME/manage.py - -until python ../check_db.py --service-name Postgres --ip ${POSTGRES_PORT_5432_TCP_ADDR:-postgis} --port ${POSTGRES_PORT_5432_TCP_PORT:-5432} -do - echo "Waiting for postgres server" - sleep 2 -done - -echo "=== RUNNING COMMAND $1 ===" - -case "$1" in - dev) - if [ ! -f $DJANGO_HOME/storage/.migrated ]; then - touch $DJANGO_HOME/storage/.migrated - echo "Running migrations first" - $WORK_DIR/docker-entrypoint.sh setup_db - fi - echo "Running Development Server on ${BIND_HOST}:${PORT}" - python $DJANGO_HOME/manage.py runserver ${BIND_HOST}:${PORT} - ;; - bash) - /bin/bash "${@:2}" - ;; - manage) - python $DJANGO_HOME/manage.py "${@:2}" - ;; - setup_db) - #psql -U postgres -tc "SELECT 1 FROM pg_database WHERE datname = 'my_db'" | grep -q 1 || psql -U postgres -c "CREATE DATABASE my_db" - #psql -h $POSTGRES_PORT_5432_TCP_ADDR -U $PGPASSWORD -c "CREATE DATABASE $POSTGRES_DB_NAME" - python $DJANGO_HOME/manage.py reset_db --noinput --close-sessions - python $DJANGO_HOME/manage.py makemigrations - python $DJANGO_HOME/manage.py migrate - python $DJANGO_HOME/manage.py import_super_user - #python $DJANGO_HOME/manage.py load_goup_and_permissions - ;; - lint) - pylint "${@:2}" - ;; - python) - python "${@:2}" - ;; - pip) - pip "${@:2}" - ;; - shell) - python $DJANGO_HOME/manage.py shell_plus - ;; - gunicorn) - if [ ! -f $DJANGO_HOME/storage/.migrated ]; then - touch $DJANGO_HOME/storage/.migrated - echo "Running migrations first" - $WORK_DIR/docker-entrypoint.sh setup_db - fi - python $DJANGO_HOME/manage.py collectstatic --noinput - echo "Running App (gunicorn) on ${BIND_HOST}:${PORT}" - gunicorn $DJANGO_PROJECT_NAME.wsgi:application \ - --name $DJANGO_PROJECT_NAME \ - --bind ${BIND_HOST}:${PORT} \ - --workers ${GUNICORN_WORKERS} \ - --timeout ${GUNICORN_WORKER_TIMEOUT:-120} \ - --log-level=${GUNICORN_LOG_LEVEL} \ - --log-file=${GUNICORN_LOG_FILE} \ - --access-logfile=${GUNICORN_ACCESS_LOG_FILE} - ;; - daphne) - python $DJANGO_HOME/manage.py collectstatic --noinput - echo "Running App (daphne) on ${BIND_HOST}:${PORT}" - daphne -b ${BIND_HOST} -p $PORT $DJANGO_PROJECT_NAME.asgi:application - ;; - worker) - echo "Running App (worker)for ${@:2}" - python $DJANGO_HOME/manage.py runworker "${@:2}" - ;; - celerybeat) - rm -f ${CELERYBEAT_PID_FILE} - echo "Running App (celery)..." - celery beat -A ${DJANGO_PROJECT_NAME} --pidfile=${CELERYBEAT_PID_FILE} --loglevel=${CELERYD_LOG_LEVEL} -s ${CELERYBEAT_SCHEDULE_FILE} --logfile=${CELERYD_LOG_FILE} - ;; - celeryworker) - rm -f ${CELERYD_PID_FILE} - echo "Running App (celery)..." - celery worker -A ${DJANGO_PROJECT_NAME} --pidfile=${CELERYD_PID_FILE} --loglevel=${CELERYD_LOG_LEVEL} --logfile=${CELERYD_LOG_FILE} --time-limit=$CELERYD_TIMELIMIT --concurrency=$CELERYD_CONCURRENCY - ;; - *) - show_help - ;; -esac diff --git a/docker/backend/project_requirements.txt b/docker/backend/project_requirements.txt deleted file mode 100644 index 378ea8d4..00000000 --- a/docker/backend/project_requirements.txt +++ /dev/null @@ -1,106 +0,0 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-flake8==3.7.9 -future==0.18.2 -geopandas==0.11.1 -gunicorn==20.0.4 -hiredis==1.0.1 -hyperlink==19.0.0 -idna==2.9 -incremental==17.5.0 -Jinja2==3.1.2 -kiwisolver==1.2.0 -kombu==4.6.8 -lxml==4.9.1 -MarkupSafe==2.1.1 -matplotlib==3.2.1 -mccabe==0.6.1 -msgpack==0.6.2 -msgpack-python==0.5.6 -munch==2.5.0 -nose==1.3.7 -numpy==1.23.3 -oauthlib==3.1.0 -packaging==21.3 -pandas==1.5.0 -Pillow==7.1.2 -psycopg2==2.8.5 -pyasn1==0.4.8 -pyasn1-modules==0.2.8 -pycodestyle==2.5.0 -pycparser==2.20 -pydap @ git+https://github.com/rbeucher/pydap.git@16bf193203af83447bd37b07a693f225a7676795 -pyflakes==2.1.1 -PyHamcrest==2.0.2 -pyjq==2.6.0 -PyJWT==1.7.1 -pyOpenSSL==19.1.0 -pyparsing==2.4.7 -pyproj==3.4.0 -python-crontab==2.4.2 -python-dateutil==2.8.1 -python3-openid==3.1.0 -pytz==2020.1 -redis==3.5.1 -requests==2.23.0 -requests-oauthlib==1.3.0 -service-identity==18.1.0 -Shapely==1.8.4 -six==1.14.0 -social-auth-app-django==3.1.0 -social-auth-core==3.3.3 -soupsieve==2.3.2.post1 -sqlparse==0.3.1 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+optional = false +python-versions = ">=3.7" +files = [ + {file = "asgiref-3.7.2-py3-none-any.whl", hash = "sha256:89b2ef2247e3b562a16eef663bc0e2e703ec6468e2fa8a5cd61cd449786d4f6e"}, + {file = "asgiref-3.7.2.tar.gz", hash = "sha256:9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed"}, +] + +[package.dependencies] +typing-extensions = {version = ">=4", markers = "python_version < \"3.11\""} + +[package.extras] +tests = ["mypy (>=0.800)", "pytest", "pytest-asyncio"] + +[[package]] +name = "async-timeout" +version = "4.0.3" +description = "Timeout context manager for asyncio programs" +optional = false +python-versions = ">=3.7" +files = [ + {file = "async-timeout-4.0.3.tar.gz", hash = "sha256:4640d96be84d82d02ed59ea2b7105a0f7b33abe8703703cd0ab0bf87c427522f"}, + {file = "async_timeout-4.0.3-py3-none-any.whl", hash = "sha256:7405140ff1230c310e51dc27b3145b9092d659ce68ff733fb0cefe3ee42be028"}, +] + +[[package]] +name = "attrs" +version = "23.2.0" +description = "Classes Without 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new file mode 100644 index 00000000..5c1dca40 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,59 @@ +[tool.poetry] +name = "arpav-ppcv-backend" +version = "0.1.0" +description = "Backend component of the ARPAV-PPCV platform" +authors = ["Geobeyond "] +license = "MIT" +readme = "README.md" +packages = [ + {include = "djangoapp", from = "backend"}, + {include = "forecastattributes", from = "backend/padoa"}, + {include = "places", from = "backend/padoa"}, + {include = "thredds", from = "backend/padoa"}, +] + +[tool.poetry.dependencies] +python = "^3.10" +django = "3.0.6" +djangorestframework = "3.11.0" +typer = "^0.9.0" +django-dotenv = "^1.4.2" +django-extensions = "2.2.9" +django-celery-beat = "2.0.0" +celery = "4.4.2" +django-celery-results = "1.2.1" +django-oauth-toolkit = "1.3.2" +channels = "2.4.0" +djangorestframework-gis = "0.15" +django-cors-headers = "3.2.1" +django-guardian = "2.2.0" +psycopg2-binary = "2.8.5" +djangorestframework-bulk = "0.2.1" +xmltodict = "0.12.0" +pydap = "3.4.0" +threddsclient = "0.4.2" +pandas = "1.5.0" +requests = "2.23.0" +python-dateutil = "2.8.1" +pytz = "2020.1" +django-redis-sessions = "0.6.1" + + +[tool.poetry.group.dev.dependencies] +pytest = "^8.0.1" +coverage = "^7.4.1" +pytest-cov = "^4.1.0" +pytest-django = "^4.8.0" +dagger-io = "^0.9.10" + + +[tool.pytest.ini_options] +addopts = "--verbose --cov --cov-branch --log-level=warning" + +[tool.coverage.run] +branch = true +source = ["djangoapp", "forecastattributes", "places", "thredds"] + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/tests/ci/main.py b/tests/ci/main.py index 24afe292..2a426f19 100644 --- a/tests/ci/main.py +++ b/tests/ci/main.py @@ -34,7 +34,6 @@ def sanitize_docker_image_name(docker_image_name: str) -> str: def get_env_variables() -> dict[str, str | None]: return { - "API_COMMAND": os.getenv("API_COMMAND", "daphne"), "DEBUG": os.getenv("DEBUG", "0"), "PGPASSWORD": os.getenv("PGPASSWORD", "postgres"), "POSTGRES_DB_NAME": os.getenv("POSTGRES_DB_NAME", "postgres"), @@ -96,7 +95,7 @@ async def run_tests( return await ( built_container.with_service_binding("db", postgis_service) .without_entrypoint() - .with_mounted_directory("/opt/api/tests", client.host().directory("./tests")) + # .with_mounted_directory("/opt/api/tests", client.host().directory("./tests")) .with_env_variable("DEBUG", env_variables["DEBUG"]) .with_env_variable("POSTGRES_DB_NAME", env_variables["POSTGRES_DB_NAME"]) .with_env_variable("POSTGRES_USER", env_variables["POSTGRES_USER"]) @@ -107,18 +106,10 @@ async def run_tests( .with_env_variable("THREDDS_HOST", env_variables["THREDDS_HOST"]) .with_env_variable("THREDDS_PASSWORD", env_variables["THREDDS_PASSWORD"]) .with_env_variable("THREDDS_USER", env_variables["THREDDS_USER"]) + .with_exec(shlex.split("poetry install --with dev")) .with_exec( shlex.split( - "pip install " - "coverage==7.4.1 " - "pytest==8.0.0 " - "pytest-cov==4.1.0 " - "pytest-django==4.8.0" - ) - ) - .with_exec( - shlex.split( - "python manage.py makemigrations " + "poetry run django-admin makemigrations " "users " "groups " "forecastattributes " @@ -126,9 +117,10 @@ async def run_tests( "thredds" ) ) - .with_exec(shlex.split("python manage.py migrate")) + .with_exec(shlex.split("poetry run django-admin migrate")) .with_exec( - shlex.split("pytest --verbose --cov -k 'padoa' -x --reuse-db ../tests") + shlex.split( + "poetry run pytest --reuse-db tests") ) ).stdout() @@ -150,7 +142,7 @@ async def run_pipeline( client.container() .build( context=src, - dockerfile="Dockerfile" + dockerfile="docker/Dockerfile" ) .with_label( "org.opencontainers.image.source",