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Changelog

This file documents all notable changes to the GEOS-Chem Classic wrapper repository since version 13.4.1. See also CHANGELOG files for individual submodules:

  • src/geos-chem/CHANGELOG.md
  • src/HEMCO/CHANGELOG.md
  • src/Cloud-J/CHANGELOG.md

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[14.5.0] - 2024-11-08

Changed

  • Updated GEOS-Chem to 14.5.0
  • Updated HEMCO to 3.10.0
  • Updated Cloud-J to 8.0.1
  • Updated docs/source/geos-chem-shared-docs/spack/packages.yaml to use GCC 12.2.0 compilers
  • Updated documentation for version 14.5.0
  • Moved several doc files (not supplemental guides) that are used in both GCClassic and GCHP the to geos-chem-shared-docs/doc folder

Fixed

  • Fixed formatting error in .github/workflows/stale.yml that caused the Mark Stale Issues action not to run
  • Updated to Python package jinja2==3.1.4 in docs/requirements.txt (fixes a security issue)

[14.4.3] - 2024-08-13

Changed

  • Updated GEOS-Chem (science codebase) to 14.4.3
  • Updated HEMCO to 3.9.3
  • Updated Cloud-J to 7.7.3
  • Updated documentation (clarified discussion of grid edges)

Fixed

  • Added brackets around exempt-issue-labels list in .github/workflows/stale.yml

[14.4.2] - 2024-07-24

Added

  • ReadTheDocs update for for Cloud-J input parameter num_levs_with_cloud
  • ReadTheDocs update: add section about using a dry-run simulation to Quickstart Guide

Changed

  • Updated Cloud-J submodule to 7.7.2
  • Discontinue support of FAST-JX for all simulations except Hg
  • ReadTheDocs now describes latitude and longitude bounds as grid cell edges

[14.4.1] - 2024-06-28

Fixed

  • Fixed formatting error in .github/workflows/stale.yml that caused the Mark Stale Issues action not to run

[14.4.0] - 2024-05-30

Added

  • RTD docs now includes Supplemental Guide "Archiving Output with the History diagnostics"
  • GitHub Action config file .github/workflows/stale.yml, which replaces StaleBot
  • Added git submodule HETP for aerosol thermodynamics in GEOS-Chem

Changed

  • Updated Python package versions for ReadTheDocs in docs/requirements.txt
  • Now request Python 3.12 for ReadTheDocs builds in .readthedocs.yaml
  • Updated GEOS-Chem submodule to 14.4.0
  • Updated HEMCO submodule to 3.9.0
  • Converted Github issue templates to issue forms using YAML definition files
  • Updated RTD documentation for the 14.4.0 release

Removed

  • BPCH_DIAG configuration option and related ReadTheDocs documentation
  • GitHub config files .github/stale.yml and .github/no-response.yml
  • Unused CO2 and carbon simulation options from geoschem_config.yml (and from related code in co2_mod.F90).

[14.3.1] - 2024-04-02

Added

  • GitHub action to perform compile-only integration tests

Changed

  • Updated GEOS-Chem submodule to 14.3.1
  • Updated HEMCO submodule to 3.8.1
  • Now use short submodule names (i.e. without the full path) in .gitmodules
  • Remove obsolete CH4 menu options from config file documentation

[14.3.0] - 2024-02-07

Changed

  • Updated GEOS-Chem submodule to 14.3.0
  • Updated HEMCO submodule to 3.6.0

Added

  • Added Cloud-J submodule which is the new default photolysis package used in GEOS-Chem
  • Added compile option FASTJX to use legacy FAST-JX photolysis in GEOS-Chem instead of Cloud-J
  • Added ReadTheDocs documentation for nested-grid simulations

[14.2.3] - 2023-12-01

Added

  • Script .release/changeVersionNumbers.sh to change version numbers before a new GEOS-Chem Classic release

[14.2.2] - 2023-10-23

Changed

  • Updated GEOS-Chem submodule to 14.2.2

[14.2.1] - 2023-10-10

Changed

  • test now points to src/GEOS-Chem/test
  • Updated GEOS-Chem submodule to 14.2.1
  • Updated HEMCO submodule to 3.7.1
  • Updated version numbers
  • Updated version numbers in CMakeLists.txt and docs/source/conf.py to 14.2.0

[14.2.0] - 2023-10-05

Added

  • Quick start guide for GEOS-Chem Classic in ReadTheDocs
  • Add note about WashU status downtime and link to itstatus.wustl.edu
  • Added SatDiagn to list of GEOS-Chem History collections
  • Added definitions for transport tracer properties to ReadTheDocs

Changed

  • Updated GEOS-Chem submodule to 14.2.0
  • Updated HEMCO submodule to 3.7.0
  • Updated version numbers in CMakeLists.txt and docs/source/conf.py to 14.2.0
  • Reorganize folder structure of ReadTheDocs docs/source subdirectories
  • Note that HEMCO log output is now sent to the GEOS-Chem log file
  • Updated AUTHORS.txt for version 14.2.0
  • Updated links in README.md to point to http://geos-chem.org
  • Updated logo & badge links in README.md to use HTML
  • Updated version numbers to 14.2.0

Fixed

  • Fixed typo in Intel debug option in CMakeLists.txt
  • Fixed broken link to NCO page in ReadTheDocs

Removed

  • passive_species menu in geoschem_config.rst ReadTheDocs file

[14.1.1] - 2023-03-03

Added

  • Added .github/ISSUE_TEMPLATE/config.yml file w/ Github issue options

Changed

  • Updated GEOS-Chem submodule to 14.1.1
  • Updated HEMCO submodule to 3.6.2
  • The GitHub PR template is now named ./github/PULL_REQUEST_TEMPLATE.md
  • Updated ReadTheDocs user registration documentation GEOS-Chem 14.1.1
  • Updated ReadTheDocs run directory creation information for GEOS-Chem 14.1.1
  • Updated version numbers in CMakeLists.txt and docs/source/conf.py to 14.1.1

[14.1.0] - 2023-02-01

Added

  • Added SANITIZE CMake option

Changed

  • Updated GEOS-Chem submodule to 14.1.0
  • Updated HEMCO submodule to 3.6.0
  • Updated ReadTheDocs documentation for 14.1.0

Fixed

  • Fixed logic in .github/workflows/findRefKey.sh for determing previous commit

[14.0.2] - 2022-11-29

Changed

  • Updated GEOS-Chem submodule to 14.0.2
  • Updated HEMCO submodule to 3.5.2
  • Updated the documentation for clarity

[14.0.1] - 2022-10-31

Changed

  • Updated GEOS-Chem submodule to 14.0.1

[14.0.0] - 2022-10-25

Added

  • Added files for GEOS-Chem User Manual on ReadTheDocs
  • Created CHANGELOG.md

Changed

  • Changed GEOS-Chem submodule to 14.0.0 release
  • Changed HEMCO submodule to 3.5.0 release
  • Updated CONTRIBUTING.md and SUPPORT.md to retire guidelines on GEOS-Chem wiki