diff --git a/CHANGELOG.md b/CHANGELOG.md index c4fbf4b63..d773b3b63 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -16,6 +16,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), - Added new species ALK4N1 and ALK4N2 to Ox family in KPP - Added Cloud-J input parameters to geoschem_config.yml in new photolysis sub-menu called cloud-j - Added computation of water concentration to use in photolysis for application of UV absorption by water in Cloud-J v8 +- Added `Is_Photolyis: true` to APINP, BPINOOH, BPINP, C96O2H, H2O, HNO4, LIMAL, LIMO2H, LIMO3H, PINAL, PINO3H, PINONIC, and SO2 in `species_database.yml` ### Changed - Copy values from `State_Chm%KPP_AbsTol` to `ATOL` and `State_Chm%KPP_RelTol` to `RTOL` for fullchem and Hg simulations @@ -30,6 +31,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), - Updated `GFED4_Climatology` entries to point to the climatology file for 2010-2023 - Read aerosol optical properties files from new data directory specified in geoschem_config.yml rather than directory containing photolysis input files - Call `RD_AOD` and `CALC_AOD` from `Init_Aerosol` rather than `Init_Photolysis` +- Moved PINO3H entry in `species_database.yml` to be in alphabetical order ### Fixed - Simplified SOA representations and fixed related AOD and TotalOA/OC calculations in benchmark. @@ -39,6 +41,9 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), - Changed PPN photolysis reaction rate constant to `PHOTOL(167)` - Changed photolysis reactions from Travis et al (2024) rate constnats to`PHOTOL(168:177)` + +### Removed +- Removed `Is_Photolysis: true` from ACR, APAN, ALK4N2, ALK4P, APINN, AROMPN, BPINN, BPINON, C96N, CHCl3, HC5A, LIMN, LIMNB, LIMPAN, MEKPN, MPAN, PHAN, PIN, PINPAN, R7N2, R7P, and RNO3 in `species_database.yml` ## [14.4.3] - 2024-08-13 ### Added diff --git a/run/shared/species_database.yml b/run/shared/species_database.yml index 564e876aa..2dba22e03 100644 --- a/run/shared/species_database.yml +++ b/run/shared/species_database.yml @@ -28,7 +28,6 @@ ACR: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true MW_g: 56.06 ACTA: DD_F0: 1.0 @@ -79,7 +78,6 @@ APAN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 133.06 WD_RetFactor: 2.0e-2 @@ -187,7 +185,6 @@ ALK4N2: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 119.10 WD_RetFactor: 2.0e-2 @@ -206,7 +203,6 @@ ALK4P: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 90.14 WD_RetFactor: 2.0e-2 @@ -272,6 +268,7 @@ APINP: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -285,7 +282,6 @@ APINN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -358,7 +354,6 @@ AROMPN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 207.1 WD_RetFactor: 2.0e-2 @@ -573,7 +568,6 @@ BPINN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -610,7 +604,6 @@ BPINON: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -624,6 +617,7 @@ BPINOOH: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -637,6 +631,7 @@ BPINP: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -862,7 +857,6 @@ C96N: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -881,6 +875,7 @@ C96O2H: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -1143,7 +1138,6 @@ CHCl3: FullName: Chloroform Is_Advected: true Is_Gas: true - Is_Photolysis: true MW_g: 119.35 Cl: Formula: Cl @@ -1687,6 +1681,7 @@ H2O: FullName: Water vapor Is_Advected: true Is_Gas: true + Is_Photolysis: true MW_g: 18.02 H2O2: Background_VV: 4.0e-15 @@ -1755,7 +1750,6 @@ HC5A: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 100.13 WD_RetFactor: 2.0e-2 @@ -2364,6 +2358,7 @@ HO2: Formula: HO2 FullName: Hydroperoxyl radical Is_Gas: true + Is_Photolysis: true MW_g: 33.01 HOBr: DD_F0: 0.0 @@ -3095,6 +3090,7 @@ LIMAL: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -3139,7 +3135,6 @@ LIMN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -3153,7 +3148,6 @@ LIMNB: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -3185,6 +3179,7 @@ LIMO2H: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -3203,6 +3198,7 @@ LIMO3H: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -3216,7 +3212,6 @@ LIMPAN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -3459,7 +3454,6 @@ MEKPN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 151.07 WD_RetFactor: 2.0e-2 @@ -3635,7 +3629,6 @@ MPAN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 147.10 WD_RetFactor: 2.0e-2 @@ -4321,7 +4314,6 @@ PHAN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 137.0483 WD_RetFactor: 2.0e-2 @@ -4348,7 +4340,6 @@ PIN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -4362,6 +4353,7 @@ PINAL: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -4370,6 +4362,20 @@ PINO3: FullName: Acylperoxy radical from APIN Is_Gas: true MW_g: 185.27 +PINO3H: + DD_F0: 1.0 + DD_Hstar: 1.0e+5 + Formula: C10H18O4 + FullName: Pinonic peracid + Henry_CR: 6039.0 + Henry_K0: 1.0e+5 + Is_Advected: true + Is_DryDep: true + Is_Gas: true + Is_Photolysis: true + Is_WetDep: true + MW_g: 186.28 + WD_RetFactor: 2.0e-2 PINONIC: DD_F0: 1.0 DD_Hstar: 3.14e+5 @@ -4380,6 +4386,7 @@ PINONIC: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 186.28 WD_RetFactor: 2.0e-2 @@ -4393,7 +4400,6 @@ PINPAN: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 215.28 WD_RetFactor: 2.0e-2 @@ -4405,19 +4411,6 @@ PIO2: FullName: Peroxy radical from MTPA Is_Gas: true MW_g: 185.27 -PINO3H: - DD_F0: 1.0 - DD_Hstar: 1.0e+5 - Formula: C10H18O4 - FullName: Pinonic peracid - Henry_CR: 6039.0 - Henry_K0: 1.0e+5 - Is_Advected: true - Is_DryDep: true - Is_Gas: true - Is_WetDep: true - MW_g: 186.28 - WD_RetFactor: 2.0e-2 PIP: Formula: C10H18O3 FullName: Peroxide from MTPA @@ -4839,7 +4832,6 @@ R7N2: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 161.2 WD_RetFactor: 2.0e-2 @@ -4877,7 +4869,6 @@ R7P: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 132.20 WD_RetFactor: 2.0e-2 @@ -5003,7 +4994,6 @@ RNO3: Is_Advected: true Is_DryDep: true Is_Gas: true - Is_Photolysis: true Is_WetDep: true MW_g: 203.15 WD_RetFactor: 2.0e-2 @@ -5113,6 +5103,7 @@ SO2: Is_Advected: true Is_DryDep: true Is_Gas: true + Is_Photolysis: true Is_WetDep: true MW_g: 64.04 WD_AerScavEff: 1.0