update of our Species table with ingestion of NCBI taxononmy data

[only1chunts]

User story

As a curator
I want to be able to bulk update the Species table in GigaDB from the NCBI taxonomy
So that we can maintain and upto date Species table

Acceptance criteria

Given the Species table in GigaDB is out of date
When I request an update
Then anything new in NCBI taxonomy is imported into GigaDB Species table
This should include the Taxon ID, Scientific name, and Genbank Name fields

Additional Info

The Species table was imported a long time ago and as far as I know has never been updated, we dont need to update it very often, but it would be useful to be able to update it periodically or on request.

FTP link: https://ftp.ncbi.nih.gov/pub/taxonomy/
API: https://www.ncbi.nlm.nih.gov/home/develop/api/

Note: currently, there is a species id that's not NCBI that we need to keep (-1, Non assigned) as it's for special internal purpose

Product Backlog Item Ready Checklist

• Business value is clearly articulated
• Item is understood enough by the IT team so it can make an informed decision as to whether it can complete this item
• Dependencies are identified and no external dependencies would block this item from being completed
• At the time of the scheduled sprint, the IT team has the appropriate composition to complete this item
• This item is estimated and small enough to comfortably be completed in one sprint
• Acceptance criteria are clear and testable
• Performance criteria, if any, are defined and testable
• The Scrum team understands how to demonstrate this item at the sprint review

Product Backlog Item Done Checklist

• Item(s) in increment pass all Acceptance Criteria
• Code is refactored to best practices and coding standards
• Documentation is updated as needed
• Data security has not been compromised (with particular reference to the personal information we hold in GigaDB)
• No deviation from the team technology stack and software architecture has been introduced
• The product is in a releasable state (i.e. the increment has not broken anything)