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FrAnK

A Fragment Annotation Kit for Mass Spectral Peaks

Setup Guide

The following setup has been optimised for Ubuntu Desktop 18.04.2 LTS

From a terminal, run the following commands:

  1. sudo apt install python-minimal python-pip libmysqlclient-dev libxml2-dev libxslt-dev python-dev

  2. pip install virtualenv

  3. cd into the directory you wish to run the application from

  4. git clone https://github.com/glasgowcompbio/FrAnK.git

  5. cd FrAnK

  6. virtualenv env

  7. source env/bin/activate

  8. pip install pipenv

  9. pipenv install PipFile --skip-lock

  10. cd django_projects

  11. python manage.py migrate

  12. python manage.py createsuperuser

  13. python manage.py runserver

  14. N.B. This file was missing https://raw.githubusercontent.com/RonanDaly/pimp/master/venv/lib/python2.7/site-packages/pymzml/obo/psi-ms-4.0.1.obo