ImportError: No module named teHmm.common

[zhenzhenyang-psu]

Hi there,
i tried to run ./setup.sh under teHmm, however, there is an error popping up saying
" from teHmm.common import checkRequirements
ImportError: No module named teHmm.common"

I installed other dependencies, but I am not sure where to get this teHmm.common module. Do you have an idea?

Thanks very much!

Zhenzhen

[glennhickey]

I think the problem is your PYTHONPATH. Try setting it, as described in
the README, to include the parent directory of tehmm.

The README should be changed to list setting the PYHTONPATH before running
setup.

On Mon, Apr 25, 2016 at 3:38 PM, zzy5028 [email protected] wrote:

Hi there,
i tried to run ./setup.sh under teHmm, however, there is an error popping
up saying
" from teHmm.common import checkRequirements
ImportError: No module named teHmm.common"

I installed other dependencies, but I am not sure where to get this
teHmm.common module. Do you have an idea?

Thanks very much!

Zhenzhen

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#1

[zhenzhenyang-psu]

Hi Glenn,
Thanks very much for your reply:). I have fixed that problem, but now there is another one while I was running python allTests.py

"python allTests.py
...........................sh: compareBedStates.py: command not found

F...............

FAIL: testCompare (teHmm.tests.compareTest.TestCase)

Traceback (most recent call last):
File "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/teHmm/tests/compareTest.py", line 53, in testCompare
assert ret == 0
AssertionError

---

Ran 43 tests in 32.581s

FAILED (failures=1)"

Do you think this is too big a problem?

Thanks,
Zhenzhen

[glennhickey]

That's probably not having tehmm/bin in your PATH....

On Mon, Apr 25, 2016 at 4:31 PM, zzy5028 [email protected] wrote:

Hi Glenn,
Thanks very much for your reply:). I have fixed that problem, but now
there is another one while I was running python allTests.py

"python allTests.py
...........................sh: compareBedStates.py: command not found
F............... FAIL: testCompare (teHmm.tests.compareTest.TestCase)

Traceback (most recent call last):
File
"/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/teHmm/tests/compareTest.py",
line 53, in testCompare
assert ret == 0

AssertionError

Ran 43 tests in 32.581s

FAILED (failures=1)"

Do you think this is too big a problem?

Thanks,
Zhenzhen

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#1 (comment)

[zhenzhenyang-psu]

I confirmed that it is indeed in my PATH...