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report error when call variants based on RNA-seq data #909

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ChenDepp opened this issue Nov 28, 2024 · 0 comments
Open

report error when call variants based on RNA-seq data #909

ChenDepp opened this issue Nov 28, 2024 · 0 comments

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@ChenDepp
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hello @pichuan
When I run deepvariants to identify variants based on RNA-seq data, the command is as follows

docker run -it --rm -u `id -u`:`id -g` -v /calculate:/calculate -w `pwd` google/deepvariant:latest /opt/deepvariant/bin/run_deepvariant --model_type=WGS --customized_model=/calculate/home/user/zhangtianyuan/Project/00.dv/model/model.ckpt --ref=Saccharomyces_cerevisiae.fa --reads=T2-3.sorted.bam --output_vcf=T2-3.vcf.gz --intermediate_results_dir output/intermediate_results_dir --num_shards=40

it report error as below
Image
I don't know how to debug based on the error message, So I have to ask you for help

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