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hello @pichuan When I run deepvariants to identify variants based on RNA-seq data, the command is as follows
docker run -it --rm -u `id -u`:`id -g` -v /calculate:/calculate -w `pwd` google/deepvariant:latest /opt/deepvariant/bin/run_deepvariant --model_type=WGS --customized_model=/calculate/home/user/zhangtianyuan/Project/00.dv/model/model.ckpt --ref=Saccharomyces_cerevisiae.fa --reads=T2-3.sorted.bam --output_vcf=T2-3.vcf.gz --intermediate_results_dir output/intermediate_results_dir --num_shards=40
it report error as below I don't know how to debug based on the error message, So I have to ask you for help
The text was updated successfully, but these errors were encountered:
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hello @pichuan
When I run deepvariants to identify variants based on RNA-seq data, the command is as follows
it report error as below
I don't know how to debug based on the error message, So I have to ask you for help
The text was updated successfully, but these errors were encountered: