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Colinear_mummer_NGenomeSyn

Script used for NGenomeSyn and Mummer

The install of mummer:

conda install -c bioconda mummer

You can also build from the souce code at github:

https://github.com/mummer4/mummer

The mummer.sh is used to produce plot picture of chromosome

The github of NGenomeSyn:

https://github.com/hewm2008/NGenomeSyn

You can alse read the follow instruction to get more information:

https://zhuanlan.zhihu.com/p/354274078?utm_campaign=shareopn&utm_medium=social&utm_oi=794216328968937472&utm_psn=1543893903224565760&utm_source=wechat_session

https://zhuanlan.zhihu.com/p/490958021?utm_campaign=shareopn&utm_medium=social&utm_oi=794216328968937472&utm_psn=1543894117318328321&utm_source=wechat_session

The syn.pl script is used to filter coords file , Usage:

    perl syn.pl [coords_file] [filtered_coords_file]

You can also filter the delta file and use show-coords command in mummer.