DESCRIPTION

Encoding: UTF-8
Package: EaCoN
Type: Package
Title: EaCoN : Easy Copy Number !
Version: 0.3.6-2
Date: 2021-10-18
Author: Bastien Job
Authors@R: person("Bastien", "Job", email = "bastien.job@inserm.fr", role = c("aut", "cre"))
Depends: R(>= 3.1.0)
Imports:
  affxparser,
  aroma.light,
  ASCAT,
  Biostrings,
  BSgenome,
  changepoint,
  data.table,
  doParallel,
  dplyr,
  DT,
  facets,
  foreach,
  GenomeInfoDb,
  GenomicRanges,
  iotools,
  IRanges,
  limma,
  mclust,
  R.utils,
  rhdf5,
  seqinr,
  sequenza
Suggests:
  BSgenome.Hsapiens.UCSC.hg18,
  BSgenome.Hsapiens.UCSC.hg19,
  BSgenome.Hsapiens.UCSC.hg38,
  BSgenome.Hsapiens.1000genomes.hs37d5,
  Rsamtools,
  affy.CN.norm.data,
  apt.cytoscan.2.4.0,
  apt.oncoscan.2.4.0,
  apt.snp6.1.20.0,
  rcnorm,
  rmarkdown
biocViews: Software
BugReports: https://github.com/gustaveroussy/EaCoN/issues
Description: Easy copy-number analysis for Affymetrix microarrays (snp6.0, CytoScanHD, CytoScan750K & OncoScan) and whole exome sequencing data.
License: MIT + file LICENSE
LazyData: false
Byte-Compile: yes