Packages modified with treesapp package edit lineage_ids not compatiable withe treesapp evaluate

[janstett]

I tried using treesapp package edit lineage_ids to swap NCBI lineages with GTDB lineages as described in the Wiki:
https://github.com/hallamlab/TreeSAPP/wiki/Reference-package-operations#edit

While I can use treesapp assign without a problem, I found that when I tried to run treesapp evaluate, it would run, but it would only write out the representative_taxa_sequences.fasta file.

However, I found that when I rebuilt the packages from scratch and utilized the --seqs2lineage with the new GTDB lineage table, I could run treesapp evaluate and have all the correct output print out.

Perhaps it would be best to include the recommendation to rebuild the tree with GTDB compliant tables if the user wants to run treesapp evaluate in the wiki?