Makefile

CC       = gcc
CXX      = g++
LANGFLAG = -x c++
CPPFLAGS += -I slow5lib/include/
CFLAGS   += -g -Wall -O2  -std=c99
LDFLAGS  += $(LIBS) -lpthread -lz -rdynamic -lm
BUILD_DIR = build

ifeq ($(zstd),1)
LDFLAGS		+= -lzstd
endif

BINARY = sigtk
OBJ = $(BUILD_DIR)/main.o \
      $(BUILD_DIR)/sigtk.o \
      $(BUILD_DIR)/events.o \
      $(BUILD_DIR)/model.o \
	  $(BUILD_DIR)/sref.o \
	  $(BUILD_DIR)/cmain.o \
	  $(BUILD_DIR)/cfunc.o \
	  $(BUILD_DIR)/misc.o \
	  $(BUILD_DIR)/jnn.o \
	  $(BUILD_DIR)/ss.o \
	  $(BUILD_DIR)/ent.o \
	  $(BUILD_DIR)/qts.o \


PREFIX = /usr/local
VERSION = `git describe --tags`

ifdef asan
	CFLAGS += -fsanitize=address -fno-omit-frame-pointer
	LDFLAGS += -fsanitize=address -fno-omit-frame-pointer
endif

.PHONY: clean distclean test

$(BINARY): $(OBJ) slow5lib/lib/libslow5.a
	$(CC) $(CFLAGS) $(OBJ) slow5lib/lib/libslow5.a $(LDFLAGS) -o $@

$(BUILD_DIR)/main.o: src/main.c src/misc.h src/error.h src/sigtk.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/sigtk.o: src/sigtk.c src/misc.h src/error.h src/sigtk.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/events.o: src/events.c src/misc.h src/ksort.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/model.o: src/model.c src/model.h  src/misc.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/sref.o: src/sref.c src/ref.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/cmain.o: src/cmain.c src/misc.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/cfunc.o: src/cfunc.c src/misc.h src/stat.h src/jnn.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/misc.o: src/misc.c
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/jnn.o: src/jnn.c src/stat.h src/jnn.h
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/ss.o: src/ss.c
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/ent.o: src/ent.c
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

$(BUILD_DIR)/qts.o: src/qts.c
	$(CC) $(CFLAGS) $(CPPFLAGS) $< -c -o $@

slow5lib/lib/libslow5.a:
	$(MAKE) -C slow5lib zstd=$(zstd) no_simd=$(no_simd) zstd_local=$(zstd_local)  lib/libslow5.a

clean:
	rm -rf $(BINARY) $(BUILD_DIR)/*.o
	make -C slow5lib clean

# Delete all gitignored files (but not directories)
distclean: clean
	git clean -f -X
	rm -rf $(BUILD_DIR)/* autom4te.cache

test: $(BINARY)
	scripts/test.sh

valgrind: $(BINARY)
	valgrind --leak-check=full ./sigtk