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2018-08-08 13:09:46.032 INFO 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : Starting application on RQFW3LAP0000796 with PID 16176 (C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs\texscrubber-0.1.jar started by gignwi_Ar208671 in C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs)
2018-08-08 13:09:46.094 INFO 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : No active profile set, falling back to default profiles: default
2018-08-08 13:09:46.376 INFO 16176 --- [pool-1-thread-1] s.c.a.AnnotationConfigApplicationContext : Refreshing org.springframework.context.annotation.AnnotationConfigApplicationContext@166115f0: startup date [Wed Aug 08 13:09:46 BST 2018]; root of context hierarchy
2018-08-08 13:09:48.239 WARN 16176 --- [pool-1-thread-1] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.stepScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:09:48.302 WARN 16176 --- [pool-1-thread-1] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.jobScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:09:48.925 WARN 16176 --- [pool-1-thread-1] s.c.a.AnnotationConfigApplicationContext : Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'reader' defined in org.healtex.batch.BatchConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
2018-08-08 13:09:48.982 INFO 16176 --- [pool-1-thread-1] utoConfigurationReportLoggingInitializer :
Error starting ApplicationContext. To display the auto-configuration report re-run your application with 'debug' enabled.
2018-08-08 13:09:49.013 ERROR 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : Application startup failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'reader' defined in org.healtex.batch.BatchConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:599) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1173) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1067) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:866) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:737) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:370) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:314) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:91) [classes!/:0.1]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:41) [classes!/:0.1]
at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source) [na:na]
at java.base/java.util.concurrent.FutureTask.run(Unknown Source) [na:na]
at java.desktop/javax.swing.SwingWorker.run(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:na]
at java.base/java.lang.Thread.run(Unknown Source) [na:na]
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:189) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:588) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 22 common frames omitted
Caused by: java.lang.NullPointerException: null
at org.healtex.batch.BatchConfiguration.reader(BatchConfiguration.java:64) ~[classes!/:0.1]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099.CGLIB$reader$0() ~[classes!/:0.1]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099$$FastClassBySpringCGLIB$$bef9288d.invoke() ~[classes!/:0.1]
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228) ~[spring-core-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:356) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099.reader() ~[classes!/:0.1]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 23 common frames omitted
2018-08-08 13:10:22.957 INFO 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : Starting application on RQFW3LAP0000796 with PID 16176 (C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs\texscrubber-0.1.jar started by gignwi_Ar208671 in C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs)
2018-08-08 13:10:22.988 INFO 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : No active profile set, falling back to default profiles: default
2018-08-08 13:10:23.003 INFO 16176 --- [pool-1-thread-2] s.c.a.AnnotationConfigApplicationContext : Refreshing org.springframework.context.annotation.AnnotationConfigApplicationContext@68f6a0b8: startup date [Wed Aug 08 13:10:23 BST 2018]; root of context hierarchy
2018-08-08 13:10:23.662 WARN 16176 --- [pool-1-thread-2] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.stepScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:10:23.694 WARN 16176 --- [pool-1-thread-2] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.jobScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
.Initialising pipeline ...
.Initialisation completed ...
2018-08-08 13:10:27.504 INFO 16176 --- [pool-1-thread-2] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-08-08 13:10:27.546 INFO 16176 --- [pool-1-thread-2] o.s.b.a.b.JobLauncherCommandLineRunner : Running default command line with: [--inputDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\raw_text, --workingDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\cleansed_text\temp, --outputDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\cleansed_text]
2018-08-08 13:10:28.460 INFO 16176 --- [pool-1-thread-2] o.s.b.c.r.s.JobRepositoryFactoryBean : No database type set, using meta data indicating: HSQL
2018-08-08 13:10:28.663 INFO 16176 --- [pool-1-thread-2] o.s.b.c.l.support.SimpleJobLauncher : No TaskExecutor has been set, defaulting to synchronous executor.
2018-08-08 13:10:28.788 INFO 16176 --- [pool-1-thread-2] o.s.b.f.xml.XmlBeanDefinitionReader : Loading XML bean definitions from class path resource [org/springframework/jdbc/support/sql-error-codes.xml]
2018-08-08 13:10:29.060 INFO 16176 --- [pool-1-thread-2] o.s.jdbc.support.SQLErrorCodesFactory : SQLErrorCodes loaded: [DB2, Derby, H2, HSQL, Informix, MS-SQL, MySQL, Oracle, PostgreSQL, Sybase, Hana]
2018-08-08 13:10:29.106 INFO 16176 --- [pool-1-thread-2] utoConfigurationReportLoggingInitializer :
Error starting ApplicationContext. To display the auto-configuration report re-run your application with 'debug' enabled.
2018-08-08 13:10:29.169 ERROR 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : Application startup failed
java.lang.IllegalStateException: Failed to execute CommandLineRunner
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:779) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:760) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.afterRefresh(SpringApplication.java:747) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:315) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:91) [classes!/:0.1]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:41) [classes!/:0.1]
at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source) [na:na]
at java.base/java.util.concurrent.FutureTask.run(Unknown Source) [na:na]
at java.desktop/javax.swing.SwingWorker.run(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:na]
at java.base/java.lang.Thread.run(Unknown Source) [na:na]
Caused by: org.springframework.jdbc.BadSqlGrammarException: PreparedStatementCallback; bad SQL grammar [SELECT JOB_INSTANCE_ID, JOB_NAME from BATCH_JOB_INSTANCE where JOB_NAME = ? order by JOB_INSTANCE_ID desc]; nested exception is java.sql.SQLSyntaxErrorException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.springframework.jdbc.support.SQLExceptionSubclassTranslator.doTranslate(SQLExceptionSubclassTranslator.java:91) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:73) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:649) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:684) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:716) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:726) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcJobInstanceDao.getJobInstances(JdbcJobInstanceDao.java:230) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at org.springframework.batch.core.explore.support.SimpleJobExplorer.getJobInstances(SimpleJobExplorer.java:173) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.batch.core.configuration.annotation.SimpleBatchConfiguration$PassthruAdvice.invoke(SimpleBatchConfiguration.java:127) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at com.sun.proxy.$Proxy57.getJobInstances(Unknown Source) ~[na:na]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.getNextJobParameters(JobLauncherCommandLineRunner.java:131) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.execute(JobLauncherCommandLineRunner.java:212) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.executeLocalJobs(JobLauncherCommandLineRunner.java:231) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.launchJobFromProperties(JobLauncherCommandLineRunner.java:123) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.run(JobLauncherCommandLineRunner.java:117) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:776) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
... 11 common frames omitted
Caused by: java.sql.SQLSyntaxErrorException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCPreparedStatement.(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCConnection.prepareStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:126) ~[tomcat-jdbc-8.5.11.jar!/:na]
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108) ~[tomcat-jdbc-8.5.11.jar!/:na]
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81) ~[tomcat-jdbc-8.5.11.jar!/:na]
at com.sun.proxy.$Proxy65.prepareStatement(Unknown Source) ~[na:na]
at org.springframework.jdbc.core.JdbcTemplate$SimplePreparedStatementCreator.createPreparedStatement(JdbcTemplate.java:1521) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:627) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 33 common frames omitted
Caused by: org.hsqldb.HsqlException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.hsqldb.error.Error.error(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.error.Error.error(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.readTableName(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.readTableOrSubquery(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadTableReference(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadFromClause(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadTableExpression(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQuerySpecification(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadSimpleTable(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryPrimary(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryTerm(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryExpressionBody(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryExpression(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.compileCursorSpecification(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserCommand.compilePart(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserCommand.compileStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.Session.compileStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.StatementManager.compile(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.Session.execute(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
... 45 common frames omitted
2018-08-08 13:10:29.602 INFO 16176 --- [pool-1-thread-2] s.c.a.AnnotationConfigApplicationContext : Closing org.springframework.context.annotation.AnnotationConfigApplicationContext@68f6a0b8: startup date [Wed Aug 08 13:10:23 BST 2018]; root of context hierarchy
2018-08-08 13:10:29.602 INFO 16176 --- [pool-1-thread-2] o.s.j.e.a.AnnotationMBeanExporter : Unregistering JMX-exposed beans on shutdown
The text was updated successfully, but these errors were encountered:
.Initialising pipeline ...
13:09:39.913 [AWT-EventQueue-0] INFO gate.creole.CreoleRegisterImpl - CREOLE plugin loaded: file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/plugins/ANNIE/
.Initialisation completed ...
13:09:41.372 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/plugins/ANNIE/resources/gazetteer/uk_version/lists.def
13:09:42.798 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/plugins/ANNIE/resources/gazetteer/uk_version/lists2.def
13:09:43.042 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/FAX.jape
13:09:43.206 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/PHONE.jape
13:09:43.285 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/CITY-TVD.jape
13:09:43.363 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/COUNTRY.jape
13:09:43.481 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/COUNTY.jape
13:09:43.637 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/HOSPITAL.jape
13:09:43.715 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/PROFESSION.jape
13:09:43.799 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/DOB.jape
13:09:43.863 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/ID.jape
13:09:43.932 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/POSTCODE.jape
13:09:43.979 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/AGE.jape
13:09:44.042 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/STREET.jape
13:09:44.104 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/PATIENT.jape
13:09:44.198 [AWT-EventQueue-0] DEBUG gate.util.persistence.PersistenceManager$URLHolder - CurrentPresistenceURL is file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/pipeline/uk_version/letters/passOne.xgapp created=file:/C:/Users/GIGNWI_Ar208671/Desktop/texscrubber-feature-ner-integration/build/libs/GATE/rule-set/uk_version/Letters/MEDICALSTAFF.jape
. ____ _ __ _ _
/\ / ' __ _ () __ __ _ \ \ \
( ( )__ | '_ | '| | ' / ` | \ \ \
\/ )| |)| | | | | || (| | ) ) ) )
' || .__|| ||| |_, | / / / /
=========||==============|/=////
:: Spring Boot :: (v1.5.1.RELEASE)
2018-08-08 13:09:46.032 INFO 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : Starting application on RQFW3LAP0000796 with PID 16176 (C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs\texscrubber-0.1.jar started by gignwi_Ar208671 in C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs)
2018-08-08 13:09:46.094 INFO 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : No active profile set, falling back to default profiles: default
2018-08-08 13:09:46.376 INFO 16176 --- [pool-1-thread-1] s.c.a.AnnotationConfigApplicationContext : Refreshing org.springframework.context.annotation.AnnotationConfigApplicationContext@166115f0: startup date [Wed Aug 08 13:09:46 BST 2018]; root of context hierarchy
2018-08-08 13:09:48.239 WARN 16176 --- [pool-1-thread-1] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.stepScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:09:48.302 WARN 16176 --- [pool-1-thread-1] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.jobScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:09:48.925 WARN 16176 --- [pool-1-thread-1] s.c.a.AnnotationConfigApplicationContext : Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'reader' defined in org.healtex.batch.BatchConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
2018-08-08 13:09:48.982 INFO 16176 --- [pool-1-thread-1] utoConfigurationReportLoggingInitializer :
Error starting ApplicationContext. To display the auto-configuration report re-run your application with 'debug' enabled.
2018-08-08 13:09:49.013 ERROR 16176 --- [pool-1-thread-1] o.s.boot.SpringApplication : Application startup failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'reader' defined in org.healtex.batch.BatchConfiguration: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:599) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1173) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1067) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:866) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:542) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:737) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:370) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:314) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:91) [classes!/:0.1]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:41) [classes!/:0.1]
at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source) [na:na]
at java.base/java.util.concurrent.FutureTask.run(Unknown Source) [na:na]
at java.desktop/javax.swing.SwingWorker.run(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:na]
at java.base/java.lang.Thread.run(Unknown Source) [na:na]
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.batch.item.file.MultiResourceItemReader]: Factory method 'reader' threw exception; nested exception is java.lang.NullPointerException
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:189) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:588) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 22 common frames omitted
Caused by: java.lang.NullPointerException: null
at org.healtex.batch.BatchConfiguration.reader(BatchConfiguration.java:64) ~[classes!/:0.1]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099.CGLIB$reader$0() ~[classes!/:0.1]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099$$FastClassBySpringCGLIB$$bef9288d.invoke() ~[classes!/:0.1]
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228) ~[spring-core-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:356) ~[spring-context-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.healtex.batch.BatchConfiguration$$EnhancerBySpringCGLIB$$12246099.reader() ~[classes!/:0.1]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162) ~[spring-beans-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 23 common frames omitted
.Initialising pipeline ...
.Initialisation completed ...
. ____ _ __ _ _
/\ / ' __ _ () __ __ _ \ \ \
( ( )__ | '_ | '| | ' / ` | \ \ \
\/ )| |)| | | | | || (| | ) ) ) )
' || .__|| ||| |_, | / / / /
=========||==============|/=////
:: Spring Boot :: (v1.5.1.RELEASE)
2018-08-08 13:10:22.957 INFO 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : Starting application on RQFW3LAP0000796 with PID 16176 (C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs\texscrubber-0.1.jar started by gignwi_Ar208671 in C:\Users\GIGNWI_Ar208671\Desktop\texscrubber-feature-ner-integration\build\libs)
2018-08-08 13:10:22.988 INFO 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : No active profile set, falling back to default profiles: default
2018-08-08 13:10:23.003 INFO 16176 --- [pool-1-thread-2] s.c.a.AnnotationConfigApplicationContext : Refreshing org.springframework.context.annotation.AnnotationConfigApplicationContext@68f6a0b8: startup date [Wed Aug 08 13:10:23 BST 2018]; root of context hierarchy
2018-08-08 13:10:23.662 WARN 16176 --- [pool-1-thread-2] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.stepScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
2018-08-08 13:10:23.694 WARN 16176 --- [pool-1-thread-2] o.s.c.a.ConfigurationClassEnhancer : @bean method ScopeConfiguration.jobScope is non-static and returns an object assignable to Spring's BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @resource and @PostConstruct within the method's declaring @configuration class. Add the 'static' modifier to this method to avoid these container lifecycle issues; see @bean javadoc for complete details.
.Initialising pipeline ...
.Initialisation completed ...
2018-08-08 13:10:27.504 INFO 16176 --- [pool-1-thread-2] o.s.j.e.a.AnnotationMBeanExporter : Registering beans for JMX exposure on startup
2018-08-08 13:10:27.546 INFO 16176 --- [pool-1-thread-2] o.s.b.a.b.JobLauncherCommandLineRunner : Running default command line with: [--inputDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\raw_text, --workingDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\cleansed_text\temp, --outputDir=C:\Users\GIGNWI_Ar208671\Documents\Mitre\cleansed_text]
2018-08-08 13:10:28.460 INFO 16176 --- [pool-1-thread-2] o.s.b.c.r.s.JobRepositoryFactoryBean : No database type set, using meta data indicating: HSQL
2018-08-08 13:10:28.663 INFO 16176 --- [pool-1-thread-2] o.s.b.c.l.support.SimpleJobLauncher : No TaskExecutor has been set, defaulting to synchronous executor.
2018-08-08 13:10:28.788 INFO 16176 --- [pool-1-thread-2] o.s.b.f.xml.XmlBeanDefinitionReader : Loading XML bean definitions from class path resource [org/springframework/jdbc/support/sql-error-codes.xml]
2018-08-08 13:10:29.060 INFO 16176 --- [pool-1-thread-2] o.s.jdbc.support.SQLErrorCodesFactory : SQLErrorCodes loaded: [DB2, Derby, H2, HSQL, Informix, MS-SQL, MySQL, Oracle, PostgreSQL, Sybase, Hana]
2018-08-08 13:10:29.106 INFO 16176 --- [pool-1-thread-2] utoConfigurationReportLoggingInitializer :
Error starting ApplicationContext. To display the auto-configuration report re-run your application with 'debug' enabled.
2018-08-08 13:10:29.169 ERROR 16176 --- [pool-1-thread-2] o.s.boot.SpringApplication : Application startup failed
java.lang.IllegalStateException: Failed to execute CommandLineRunner
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:779) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunners(SpringApplication.java:760) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.afterRefresh(SpringApplication.java:747) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.run(SpringApplication.java:315) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:91) [classes!/:0.1]
at org.healtex.gui.RunBatch.doInBackground(RunBatch.java:41) [classes!/:0.1]
at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source) [na:na]
at java.base/java.util.concurrent.FutureTask.run(Unknown Source) [na:na]
at java.desktop/javax.swing.SwingWorker.run(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:na]
at java.base/java.lang.Thread.run(Unknown Source) [na:na]
Caused by: org.springframework.jdbc.BadSqlGrammarException: PreparedStatementCallback; bad SQL grammar [SELECT JOB_INSTANCE_ID, JOB_NAME from BATCH_JOB_INSTANCE where JOB_NAME = ? order by JOB_INSTANCE_ID desc]; nested exception is java.sql.SQLSyntaxErrorException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.springframework.jdbc.support.SQLExceptionSubclassTranslator.doTranslate(SQLExceptionSubclassTranslator.java:91) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:73) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:81) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:649) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:684) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:716) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:726) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.batch.core.repository.dao.JdbcJobInstanceDao.getJobInstances(JdbcJobInstanceDao.java:230) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at org.springframework.batch.core.explore.support.SimpleJobExplorer.getJobInstances(SimpleJobExplorer.java:173) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.batch.core.configuration.annotation.SimpleBatchConfiguration$PassthruAdvice.invoke(SimpleBatchConfiguration.java:127) ~[spring-batch-core-3.0.7.RELEASE.jar!/:3.0.7.RELEASE]
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) ~[spring-aop-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at com.sun.proxy.$Proxy57.getJobInstances(Unknown Source) ~[na:na]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.getNextJobParameters(JobLauncherCommandLineRunner.java:131) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.execute(JobLauncherCommandLineRunner.java:212) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.executeLocalJobs(JobLauncherCommandLineRunner.java:231) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.launchJobFromProperties(JobLauncherCommandLineRunner.java:123) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.autoconfigure.batch.JobLauncherCommandLineRunner.run(JobLauncherCommandLineRunner.java:117) ~[spring-boot-autoconfigure-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
at org.springframework.boot.SpringApplication.callRunner(SpringApplication.java:776) ~[spring-boot-1.5.1.RELEASE.jar!/:1.5.1.RELEASE]
... 11 common frames omitted
Caused by: java.sql.SQLSyntaxErrorException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCPreparedStatement.(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.jdbc.JDBCConnection.prepareStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Unknown Source) ~[na:na]
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:126) ~[tomcat-jdbc-8.5.11.jar!/:na]
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108) ~[tomcat-jdbc-8.5.11.jar!/:na]
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81) ~[tomcat-jdbc-8.5.11.jar!/:na]
at com.sun.proxy.$Proxy65.prepareStatement(Unknown Source) ~[na:na]
at org.springframework.jdbc.core.JdbcTemplate$SimplePreparedStatementCreator.createPreparedStatement(JdbcTemplate.java:1521) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:627) ~[spring-jdbc-4.3.6.RELEASE.jar!/:4.3.6.RELEASE]
... 33 common frames omitted
Caused by: org.hsqldb.HsqlException: user lacks privilege or object not found: BATCH_JOB_INSTANCE
at org.hsqldb.error.Error.error(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.error.Error.error(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.readTableName(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.readTableOrSubquery(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadTableReference(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadFromClause(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadTableExpression(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQuerySpecification(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadSimpleTable(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryPrimary(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryTerm(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryExpressionBody(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.XreadQueryExpression(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserDQL.compileCursorSpecification(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserCommand.compilePart(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.ParserCommand.compileStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.Session.compileStatement(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.StatementManager.compile(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
at org.hsqldb.Session.execute(Unknown Source) ~[hsqldb-2.3.3.jar!/:2.3.3]
... 45 common frames omitted
2018-08-08 13:10:29.602 INFO 16176 --- [pool-1-thread-2] s.c.a.AnnotationConfigApplicationContext : Closing org.springframework.context.annotation.AnnotationConfigApplicationContext@68f6a0b8: startup date [Wed Aug 08 13:10:23 BST 2018]; root of context hierarchy
2018-08-08 13:10:29.602 INFO 16176 --- [pool-1-thread-2] o.s.j.e.a.AnnotationMBeanExporter : Unregistering JMX-exposed beans on shutdown
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