environment.yml

name: rMATS2HOMER
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - biopython=1.83=py312h98912ed_0
  - blas=1.0=mkl
  - bzip2=1.0.8=h5eee18b_5
  - ca-certificates=2024.3.11=h06a4308_0
  - expat=2.6.2=h6a678d5_0
  - importlib-metadata=7.0.1=py312h06a4308_0
  - intel-openmp=2023.1.0=hdb19cb5_46306
  - ld_impl_linux-64=2.38=h1181459_1
  - libexpat=2.6.2=h59595ed_0
  - libffi=3.4.4=h6a678d5_0
  - libgcc-ng=13.2.0=hc881cc4_6
  - libgomp=13.2.0=hc881cc4_6
  - libnsl=2.0.1=hd590300_0
  - libsqlite=3.45.3=h2797004_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libuuid=2.38.1=h0b41bf4_0
  - libxcrypt=4.4.36=hd590300_1
  - libzlib=1.2.13=hd590300_5
  - mkl=2023.1.0=h213fc3f_46344
  - mkl-service=2.4.0=py312h5eee18b_1
  - mkl_fft=1.3.8=py312h5eee18b_0
  - mkl_random=1.2.4=py312hdb19cb5_0
  - ncurses=6.4=h6a678d5_0
  - numpy=1.26.4=py312hc5e2394_0
  - numpy-base=1.26.4=py312h0da6c21_0
  - openssl=3.2.1=hd590300_1
  - packaging=23.2=py312h06a4308_0
  - pip=23.3.1=py312h06a4308_0
  - pyfaidx=0.8.1.1=pyhdfd78af_0
  - python=3.12.2=hab00c5b_0_cpython
  - python_abi=3.12=4_cp312
  - pyvcf3=1.0.3=pyhdfd78af_0
  - readline=8.2=h5eee18b_0
  - setuptools=68.2.2=py312h06a4308_0
  - six=1.16.0=pyhd3eb1b0_1
  - sqlite=3.41.2=h5eee18b_0
  - tbb=2021.8.0=hdb19cb5_0
  - tk=8.6.13=noxft_h4845f30_101
  - tzdata=2024a=h04d1e81_0
  - wheel=0.41.2=py312h06a4308_0
  - xz=5.4.6=h5eee18b_0
  - zipp=3.17.0=py312h06a4308_0
  - zlib=1.2.13=hd590300_5
prefix: /home/helmut/anaconda3/envs/rMATS2HOMER