From c2325ed9f146fb310191470ff8264d908167e583 Mon Sep 17 00:00:00 2001
From: thjimmylee <thjimmylee@gmail.com>
Date: Thu, 25 Mar 2021 11:10:15 +0000
Subject: [PATCH] =?UTF-8?q?Article=20is=20available=20on=20Nat=20Methods?=
 =?UTF-8?q?=2018,=20262=E2=80=93271=20(2021)?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 DESCRIPTION   | 2 +-
 README.md     | 6 +++++-
 inst/CITATION | 8 ++++----
 3 files changed, 10 insertions(+), 6 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 9507b08..0578cd3 100755
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -39,7 +39,7 @@ biocViews: SingleCell, Software, RNASeq, Transcriptomics,
             GeneExpression
 NeedsCompilation: yes
 URL: https://github.com/hemberg-lab/scfind
-BugReports: https://support.bioconductor.org/t/scfind/
+BugReports: https://github.com/hemberg-lab/scfind/issues
 LazyData: true
 Collate: 
     'AllGenerics.R'
diff --git a/README.md b/README.md
index 1e61401..30d558a 100755
--- a/README.md
+++ b/README.md
@@ -95,7 +95,11 @@ __A__: Please use [this page](https://github.com/hemberg-lab/scfind/issues).
 
 __Q__: Is __scfind__ published?  
 
-__A__: Not yet, but a copy of __scfind__ manuscript is available on [bioRxiv](https://doi.org/10.1101/788596).
+__A__: The preprint of `scfind` is available on [bioRxiv](https://doi.org/10.1101/788596). The final version of the article is available on [Nature Methods](https://doi.org/10.1038/s41592-021-01076-9). The press release of `scfind` can be found on [Wellcome Sanger Institute](https://www.sanger.ac.uk/news_item/new-search-engine-for-single-cell-atlases/). To cite this paper, article: 
+
+```
+Lee, J.T.H., Patikas, N., Kiselev, V.Y. et al. Fast searches of large collections of single-cell data using scfind. Nat Methods 18, 262–271 (2021). https://doi.org/10.1038/s41592-021-01076-9
+```
 
 __Q__: What is __scfind__ licence?
 
diff --git a/inst/CITATION b/inst/CITATION
index 13766f6..506f33b 100755
--- a/inst/CITATION
+++ b/inst/CITATION
@@ -7,12 +7,12 @@ citEntry(entry="article",
              as.person("Nikolaos Patikas"),
              as.person("Vladimir Yu. Kiselev"),
              as.person("Martin Hemberg")),
-         year = 2019,
-         journal = "bioRxiv",
-         url = "https://doi.org/10.1101/788596",
+         year = 2021,
+         journal = "Nature Methods",
+         url = "https://doi.org/10.1038/s41592-021-01076-9",
          textVersion = 
              paste(
-                 "Jimmy Tsz Hang Lee, Nikolaos Patikas, Vladimir Yu. Kiselev, Martin Hemberg (2019): ", 
+                 "Jimmy Tsz Hang Lee, Nikolaos Patikas, Vladimir Yu. Kiselev, Martin Hemberg (2021): ", 
                  "Fast searches of large collections of single cell data using scfind",
                  "github,",
                  "URL: https://github.com/hemberg-lab/scfind" )