From bffce15711964a1cc776bbeef160d232d79a2beb Mon Sep 17 00:00:00 2001 From: Vy Hong Date: Fri, 25 Oct 2024 11:10:10 -0700 Subject: [PATCH] Use the maintained fork `hdf5-metno` instead of hdf5 (#28) hdf5-rust package is not maintained and fails to build on MacOS. Updating to the maintained fork. See https://github.com/aldanor/hdf5-rust/issues/295 --- Cargo.lock | 232 ++++++++++++++++++++++++++++++++++++++++------------- Cargo.toml | 2 +- 2 files changed, 178 insertions(+), 56 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 32e3e597..25abc436 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -202,7 +202,7 @@ dependencies = [ "miniz_oxide", "object", "rustc-demangle", - "windows-targets", + "windows-targets 0.52.6", ] [[package]] @@ -531,42 +531,44 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e087f84d4f86bf4b218b927129862374b72199ae7d8657835f1e89000eea4fb" [[package]] -name = "hdf5" -version = "0.8.1" +name = "hdf5-metno" +version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bdcd9b131fd67bb827b386d0dc63d3e74196a14616ef800acf87ca5fef741a10" +checksum = "3167207f341f305141d3fbae48690442cb4b57771c827ccfae7b66b7cd8891bc" dependencies = [ - "bitflags 1.3.2", + "bitflags 2.6.0", "cfg-if", - "hdf5-derive", - "hdf5-sys", - "hdf5-types", + "hdf5-metno-derive", + "hdf5-metno-sys", + "hdf5-metno-types", "lazy_static", "libc", "ndarray", - "parking_lot", "paste", ] [[package]] -name = "hdf5-derive" -version = "0.8.1" +name = "hdf5-metno-derive" +version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a5a77ac6a41e6880594d506118c0b8bc665ec959fe4636e0c84809756d224820" +checksum = "c75d3c9831cc601c2f2829dcdc8178b2503a9127ce1255af33b7d6d3067d44e8" dependencies = [ + "proc-macro-crate", + "proc-macro-error", "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.79", ] [[package]] -name = "hdf5-sys" -version = "0.8.1" +name = "hdf5-metno-sys" +version = "0.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4842d5980dc311a7c8933c7b45534fdae84df5ae7939a0ae8e449a56d4beb3d2" +checksum = "1e7be8ee30e5034ee48dd30bc85a2fdde6e1ec0e5e19598409e8e9955eab14af" dependencies = [ "libc", "libloading", + "parking_lot", "pkg-config", "regex", "serde", @@ -575,14 +577,14 @@ dependencies = [ ] [[package]] -name = "hdf5-types" -version = "0.8.1" +name = "hdf5-metno-types" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b47268c0dfb499b1ffe5638b6e7694e7a87fe49fb92eca998a4346e5483e428f" +checksum = "236c29ece21fd13543f45b1578c4e65d5d61da38d90192812f1f6ad86ac255ac" dependencies = [ "ascii", "cfg-if", - "hdf5-sys", + "hdf5-metno-sys", "libc", ] @@ -723,15 +725,6 @@ dependencies = [ "hashbrown 0.15.0", ] -[[package]] -name = "instant" -version = "0.1.13" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e0242819d153cba4b4b05a5a8f2a7e9bbf97b6055b2a002b395c96b5ff3c0222" -dependencies = [ - "cfg-if", -] - [[package]] name = "is_terminal_polyfill" version = "1.70.1" @@ -779,12 +772,12 @@ checksum = "561d97a539a36e26a9a5fad1ea11a3039a67714694aaa379433e580854bc3dc5" [[package]] name = "libloading" -version = "0.7.4" +version = "0.8.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b67380fd3b2fbe7527a606e18729d21c6f3951633d0500574c4dc22d2d638b9f" +checksum = "4979f22fdb869068da03c9f7528f8297c6fd2606bc3a4affe42e6a823fdb8da4" dependencies = [ "cfg-if", - "winapi", + "windows-targets 0.52.6", ] [[package]] @@ -985,27 +978,25 @@ dependencies = [ [[package]] name = "parking_lot" -version = "0.11.2" +version = "0.12.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7d17b78036a60663b797adeaee46f5c9dfebb86948d1255007a1d6be0271ff99" +checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27" dependencies = [ - "instant", "lock_api", "parking_lot_core", ] [[package]] name = "parking_lot_core" -version = "0.8.6" +version = "0.9.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "60a2cfe6f0ad2bfc16aefa463b497d5c7a5ecd44a23efa72aa342d90177356dc" +checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" dependencies = [ "cfg-if", - "instant", "libc", "redox_syscall", "smallvec", - "winapi", + "windows-targets 0.52.6", ] [[package]] @@ -1087,6 +1078,38 @@ dependencies = [ "syn 1.0.109", ] +[[package]] +name = "proc-macro-crate" +version = "3.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8ecf48c7ca261d60b74ab1a7b20da18bede46776b2e55535cb958eb595c5fa7b" +dependencies = [ + "toml_edit", +] + +[[package]] +name = "proc-macro-error" +version = "1.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c" +dependencies = [ + "proc-macro-error-attr", + "proc-macro2", + "quote", + "version_check", +] + +[[package]] +name = "proc-macro-error-attr" +version = "1.0.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869" +dependencies = [ + "proc-macro2", + "quote", + "version_check", +] + [[package]] name = "proc-macro2" version = "1.0.87" @@ -1275,11 +1298,11 @@ dependencies = [ [[package]] name = "redox_syscall" -version = "0.2.16" +version = "0.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a" +checksum = "9b6dfecf2c74bce2466cabf93f6664d6998a69eb21e39f4207930065b27b771f" dependencies = [ - "bitflags 1.3.2", + "bitflags 2.6.0", ] [[package]] @@ -1533,6 +1556,23 @@ dependencies = [ "tokio", ] +[[package]] +name = "toml_datetime" +version = "0.6.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0dd7358ecb8fc2f8d014bf86f6f638ce72ba252a2c3a2572f2a795f1d23efb41" + +[[package]] +name = "toml_edit" +version = "0.22.22" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4ae48d6208a266e853d946088ed816055e556cc6028c5e8e2b84d9fa5dd7c7f5" +dependencies = [ + "indexmap 2.6.0", + "toml_datetime", + "winnow", +] + [[package]] name = "tonic" version = "0.8.3" @@ -1693,10 +1733,16 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821" name = "utils" version = "0.1.0" dependencies = [ - "hdf5", + "hdf5-metno", "rand 0.8.5", ] +[[package]] +name = "version_check" +version = "0.9.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a" + [[package]] name = "want" version = "0.3.1" @@ -1746,13 +1792,22 @@ version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets 0.48.5", +] + [[package]] name = "windows-sys" version = "0.52.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d" dependencies = [ - "windows-targets", + "windows-targets 0.52.6", ] [[package]] @@ -1761,7 +1816,22 @@ version = "0.59.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b" dependencies = [ - "windows-targets", + "windows-targets 0.52.6", +] + +[[package]] +name = "windows-targets" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9a2fa6e2155d7247be68c096456083145c183cbbbc2764150dda45a87197940c" +dependencies = [ + "windows_aarch64_gnullvm 0.48.5", + "windows_aarch64_msvc 0.48.5", + "windows_i686_gnu 0.48.5", + "windows_i686_msvc 0.48.5", + "windows_x86_64_gnu 0.48.5", + "windows_x86_64_gnullvm 0.48.5", + "windows_x86_64_msvc 0.48.5", ] [[package]] @@ -1770,28 +1840,46 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973" dependencies = [ - "windows_aarch64_gnullvm", - "windows_aarch64_msvc", - "windows_i686_gnu", + "windows_aarch64_gnullvm 0.52.6", + "windows_aarch64_msvc 0.52.6", + "windows_i686_gnu 0.52.6", "windows_i686_gnullvm", - "windows_i686_msvc", - "windows_x86_64_gnu", - "windows_x86_64_gnullvm", - "windows_x86_64_msvc", + "windows_i686_msvc 0.52.6", + "windows_x86_64_gnu 0.52.6", + "windows_x86_64_gnullvm 0.52.6", + "windows_x86_64_msvc 0.52.6", ] +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2b38e32f0abccf9987a4e3079dfb67dcd799fb61361e53e2882c3cbaf0d905d8" + [[package]] name = "windows_aarch64_gnullvm" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3" +[[package]] +name = "windows_aarch64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dc35310971f3b2dbbf3f0690a219f40e2d9afcf64f9ab7cc1be722937c26b4bc" + [[package]] name = "windows_aarch64_msvc" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469" +[[package]] +name = "windows_i686_gnu" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a75915e7def60c94dcef72200b9a8e58e5091744960da64ec734a6c6e9b3743e" + [[package]] name = "windows_i686_gnu" version = "0.52.6" @@ -1804,38 +1892,72 @@ version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66" +[[package]] +name = "windows_i686_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8f55c233f70c4b27f66c523580f78f1004e8b5a8b659e05a4eb49d4166cca406" + [[package]] name = "windows_i686_msvc" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66" +[[package]] +name = "windows_x86_64_gnu" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "53d40abd2583d23e4718fddf1ebec84dbff8381c07cae67ff7768bbf19c6718e" + [[package]] name = "windows_x86_64_gnu" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78" +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0b7b52767868a23d5bab768e390dc5f5c55825b6d30b86c844ff2dc7414044cc" + [[package]] name = "windows_x86_64_gnullvm" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d" +[[package]] +name = "windows_x86_64_msvc" +version = "0.48.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538" + [[package]] name = "windows_x86_64_msvc" version = "0.52.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec" +[[package]] +name = "winnow" +version = "0.6.20" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "36c1fec1a2bb5866f07c25f68c26e565c4c200aebb96d7e55710c19d3e8ac49b" +dependencies = [ + "memchr", +] + [[package]] name = "winreg" -version = "0.10.1" +version = "0.52.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "80d0f4e272c85def139476380b12f9ac60926689dd2e01d4923222f40580869d" +checksum = "a277a57398d4bfa075df44f501a17cfdf8542d224f0d36095a2adc7aee4ef0a5" dependencies = [ + "cfg-if", "serde", - "winapi", + "windows-sys 0.48.0", ] [[package]] diff --git a/Cargo.toml b/Cargo.toml index c295f8eb..6a1d7827 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -32,7 +32,7 @@ log = "0.4.22" env_logger = "0.11.5" tempdir = "0.3.7" ordered-float = "4.3.0" -hdf5 = "0.8.1" +hdf5 = { package = "hdf5-metno", version = "0.9.0" } kmeans = "0.11.0" memmap2 = "0.9.5" byteorder = "1.5.0"