From 0f3d2974e3d27792cfc08ea8c7a4c2961813d409 Mon Sep 17 00:00:00 2001 From: Fritz Lekschas Date: Thu, 9 Jan 2020 10:22:21 -0500 Subject: [PATCH 1/3] Update HiGlass --- package-lock.json | 2587 ++++++++++++++++++++++++++++----------------- package.json | 2 +- 2 files changed, 1636 insertions(+), 953 deletions(-) diff --git a/package-lock.json b/package-lock.json index 8de9d74..80bc6b9 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1905,28 +1905,28 @@ "dev": true }, "accepts": { - "version": "1.3.5", - "resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.5.tgz", - "integrity": "sha1-63d99gEXI6OxTopywIBcjoZ0a9I=", + "version": "1.3.7", + "resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.7.tgz", + "integrity": "sha512-Il80Qs2WjYlJIBNzNkK6KYqlVMTbZLXgHx2oT0pU/fjRHyEp+PEfEPY0R3WCwAGVOtauxh1hOxNgIf5bv7dQpA==", "dev": true, "requires": { - "mime-types": "~2.1.18", - "negotiator": "0.6.1" + "mime-types": "~2.1.24", + "negotiator": "0.6.2" }, "dependencies": { "mime-db": { - 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"execa": "^0.10.0", + "execa": "^1.0.0", "lcid": "^2.0.0", "mem": "^4.0.0" } }, "p-limit": { - "version": "2.0.0", - "resolved": "https://registry.npmjs.org/p-limit/-/p-limit-2.0.0.tgz", - "integrity": "sha512-fl5s52lI5ahKCernzzIyAP0QAZbGIovtVHGwpcu1Jr/EpzLVDI2myISHwGqK7m8uQFugVWSrbxH7XnhGtvEc+A==", + "version": "2.2.2", + "resolved": "https://registry.npmjs.org/p-limit/-/p-limit-2.2.2.tgz", + "integrity": "sha512-WGR+xHecKTr7EbUEhyLSh5Dube9JtdiG78ufaeLxTgpudf/20KqyMioIUZJAezlTIi6evxuoUs9YXc11cU+yzQ==", "dev": true, "requires": { "p-try": "^2.0.0" @@ -26368,10 +27041,20 @@ "p-limit": "^2.0.0" } }, + "pump": { + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/pump/-/pump-3.0.0.tgz", + "integrity": "sha512-LwZy+p3SFs1Pytd/jYct4wpv49HiYCqd9Rlc5ZVdk0V+8Yzv6jR5Blk3TRmPL1ft69TxP0IMZGJ+WPFU2BFhww==", + "dev": true, + "requires": { + "end-of-stream": "^1.1.0", + "once": "^1.3.1" + } + }, "semver": { - "version": "5.5.1", - "resolved": "https://registry.npmjs.org/semver/-/semver-5.5.1.tgz", - "integrity": "sha512-PqpAxfrEhlSUWge8dwIp4tZnQ25DIOthpiaHNIthsjEFQD6EvqUKUDM7L8O2rShkFccYo1VjJR0coWfNkCubRw==", + "version": "5.7.1", + "resolved": "https://registry.npmjs.org/semver/-/semver-5.7.1.tgz", + "integrity": "sha512-sauaDf/PZdVgrLTNYHRtpXa1iRiKcaebiKQ1BJdpQlWH2lCvexQdX55snPFyK7QzpudqbCI0qXFfOasHdyNDGQ==", "dev": true }, "supports-color": { @@ -26431,9 +27114,9 @@ }, "dependencies": { "uuid": { - "version": "3.3.2", - "resolved": "https://registry.npmjs.org/uuid/-/uuid-3.3.2.tgz", - "integrity": "sha512-yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA==", + "version": "3.3.3", + "resolved": "https://registry.npmjs.org/uuid/-/uuid-3.3.3.tgz", + "integrity": "sha512-pW0No1RGHgzlpHJO1nsVrHKpOEIxkGg1xB+v0ZmdNH5OAeAwzAVrCnI2/6Mtx+Uys6iaylxa+D3g4j63IKKjSQ==", "dev": true } } diff --git a/package.json b/package.json index cbd91dc..1d35601 100644 --- a/package.json +++ b/package.json @@ -26,7 +26,7 @@ "autobind-decorator": "2.4.0", "bootstrap": "3.3.7", "deep-equal": "1.0.1", - "higlass": "1.6.5", + "higlass": "1.7.2", "history": "4.7.2", "pixi.js-legacy": "5.0.4", "prop-types": "15.6.2", From e2acf3e8e4fcae34be493644db6d99fc44bcd0f2 Mon Sep 17 00:00:00 2001 From: Fritz Lekschas Date: Thu, 9 Jan 2020 10:22:34 -0500 Subject: [PATCH 2/3] Add a cog wheel icon --- src/configs/icons.js | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/src/configs/icons.js b/src/configs/icons.js index 5a8479f..d120f8d 100644 --- a/src/configs/icons.js +++ b/src/configs/icons.js @@ -54,6 +54,12 @@ export const CODE = { svg: '', }; +export const COG_WHEEL = { + viewBox: '0 0 16 16', + fillRule: 'evenodd', + svg: '' +}; + export const COPYRIGHT = { viewBox: '0 0 16 16', fillRule: 'evenodd', @@ -302,6 +308,7 @@ export default { CALENDAR, CENTER, CODE, + COG_WHEEL, COPYRIGHT, CROSS, // DATA, From b3cf143d9e4075370d1e194d6f9aec6f590d9da6 Mon Sep 17 00:00:00 2001 From: Fritz Lekschas Date: Thu, 9 Jan 2020 10:24:21 -0500 Subject: [PATCH 3/3] Add drop down for HiGlass options and implement a scrolling toggler --- src/components/App.js | 33 +++++++++++-- src/components/HiGlassLauncher.js | 14 ++++-- src/components/HiGlassViewer.js | 5 +- src/components/Main.js | 5 +- src/components/TopBar.js | 6 +++ src/components/TopBar.scss | 20 ++++++++ src/components/TopBarDropDownAppSettings.js | 54 +++++++++++++++++++++ src/views/Viewer.js | 2 + 8 files changed, 128 insertions(+), 11 deletions(-) create mode 100644 src/components/TopBarDropDownAppSettings.js diff --git a/src/components/App.js b/src/components/App.js index a5853cf..9410ef8 100644 --- a/src/components/App.js +++ b/src/components/App.js @@ -40,10 +40,19 @@ class App extends React.Component { this.state = { dialog: undefined, + higlassOptions: { + sizeMode: 'bounded' + }, isAuthenticated: auth.isAuthenticated(), }; this.domEvent = createDomEvent(props.pubSub); + + this.dialogHandlerBound = this.dialogHandler.bind(this); + this.keyDownHandlerBound = this.keyDownHandler.bind(this); + this.loginHandlerBound = this.loginHandler.bind(this); + this.logoutHandlerBound = this.logoutHandler.bind(this); + this.hgSizeModeHandlerBound = this.hgSizeModeHandler.bind(this); } componentDidMount() { @@ -57,19 +66,23 @@ class App extends React.Component { this.domEvent.register('scroll', document); this.pubSubs.push( - this.props.pubSub.subscribe('globalDialog', this.dialogHandler.bind(this)) + this.props.pubSub.subscribe('globalDialog', this.dialogHandlerBound) ); this.pubSubs.push( - this.props.pubSub.subscribe('keydown', this.keyDownHandler.bind(this)) + this.props.pubSub.subscribe('keydown', this.keyDownHandlerBound) ); this.pubSubs.push( - this.props.pubSub.subscribe('login', this.loginHandler.bind(this)) + this.props.pubSub.subscribe('login', this.loginHandlerBound) ); this.pubSubs.push( - this.props.pubSub.subscribe('logout', this.logoutHandler.bind(this)) + this.props.pubSub.subscribe('logout', this.logoutHandlerBound) + ); + + this.pubSubs.push( + this.props.pubSub.subscribe('hgSizeMode', this.hgSizeModeHandlerBound) ); } @@ -116,7 +129,8 @@ class App extends React.Component {
+ isAuthenticated={this.state.isAuthenticated} + higlassOptions={this.state.higlassOptions} /> ); } @@ -154,6 +168,15 @@ class App extends React.Component { }); } + hgSizeModeHandler(sizeMode) { + this.setState({ + higlassOptions: { + ...this.state.higlassOptions, + sizeMode, + } + }); + } + keyDownHandler(event) { if ( IGNORED_FOCUS_ELEMENTS.indexOf( diff --git a/src/components/HiGlassLauncher.js b/src/components/HiGlassLauncher.js index b224adf..46e1422 100644 --- a/src/components/HiGlassLauncher.js +++ b/src/components/HiGlassLauncher.js @@ -21,7 +21,7 @@ import '../styles/bootstrap.less'; const logger = Logger('HiGlassLauncher'); // eslint-disable-line const defaultOptions = Object.assign({ - bounded: true, + sizeMode: 'bounded', }, window.HGAC_DEFAULT_OPTIONS); @@ -46,6 +46,12 @@ class HiGlassLauncher extends React.Component { this.setMouseTool(nextProps.mouseTool); } + if (nextProps.options !== this.props.options && this.api) { + Object.entries(nextProps.options).forEach(([key, value]) => { + this.api.option(key, value); + }) + } + if (deepEqual(this.newViewConfig, nextProps.viewConfig)) { return false; } @@ -112,9 +118,9 @@ class HiGlassLauncher extends React.Component { options.mouseTool = this.props.mouseTool; } - options.bounded = this.props.autoExpand - ? false - : this.props.options.bounded; + options.sizeMode = this.props.autoExpand + ? 'default' + : this.props.options.sizeMode; const className = !this.props.autoExpand ? 'full-dim' : 'rel'; diff --git a/src/components/HiGlassViewer.js b/src/components/HiGlassViewer.js index 105cbc9..efae047 100644 --- a/src/components/HiGlassViewer.js +++ b/src/components/HiGlassViewer.js @@ -190,14 +190,16 @@ class HiGlassViewer extends React.Component { isPadded={this.props.isPadded} isZoomFixed={this.props.isZoomFixed} onError={this.onError.bind(this)} + options={this.props.options} viewConfig={this.state.viewConfigStatic} /> : )} @@ -222,6 +224,7 @@ HiGlassViewer.propTypes = { isPadded: PropTypes.bool, isStatic: PropTypes.bool, isZoomFixed: PropTypes.bool, + options: PropTypes.object.isRequired, pubSub: PropTypes.object.isRequired, server: PropTypes.string, setViewConfig: PropTypes.func.isRequired, diff --git a/src/components/Main.js b/src/components/Main.js index db5f13a..c5bb8c9 100644 --- a/src/components/Main.js +++ b/src/components/Main.js @@ -31,7 +31,9 @@ class Main extends React.Component { return ; + higlassOptions={this.props.higlassOptions} + viewConfigId={viewConfigId} + />; }} /> @@ -48,6 +50,7 @@ class Main extends React.Component { Main.propTypes = { isAuthenticated: PropTypes.bool, + higlassOptions: PropTypes.object.isRequired, location: PropTypes.object.isRequired, }; diff --git a/src/components/TopBar.js b/src/components/TopBar.js index 04394df..3dd0ded 100644 --- a/src/components/TopBar.js +++ b/src/components/TopBar.js @@ -12,6 +12,7 @@ import Hamburger from "./Hamburger"; import Icon from "./Icon"; // import TopBarDropDownLogin from './TopBarDropDownLogin'; // import TopBarDropDownUser from './TopBarDropDownUser'; +import TopBarDropDownAppSettings from './TopBarDropDownAppSettings'; // Services import auth from "../services/auth"; @@ -222,6 +223,11 @@ class TopBar extends React.Component { // } // } + {this.props.location.pathname.substr(0, 4) === '/app' && ( +
  • + +
    • + )}
  • event => { + if (event.target.checked) { + pubSub.publish('hgSizeMode', 'scroll'); + } else { + pubSub.publish('hgSizeMode', 'overflow'); + } +}; + +const TopBarDropDowAppSettings = props => ( + + + + + +
    +
    +
    HiGlass Settings:
    +
    + +
    +     +     +); + +TopBarDropDowAppSettings.propTypes = { + closeOnOuterClick: PropTypes.bool, + pubSub: PropTypes.object.isRequired +}; + +export default withPubSub(TopBarDropDowAppSettings); diff --git a/src/views/Viewer.js b/src/views/Viewer.js index e7dcb5f..bde2c7e 100644 --- a/src/views/Viewer.js +++ b/src/views/Viewer.js @@ -252,6 +252,7 @@ class Viewer extends React.Component { api={(api) => { this.hgApi = api; }} enableAltMouseTools={this.props.isAuthenticated} hasSubTopBar={this.props.isAuthenticated} + options={this.props.higlassOptions} server={server} viewConfigId={this.props.viewConfigId} /> @@ -272,6 +273,7 @@ Viewer.defaultProps = { }; Viewer.propTypes = { + higlassOptions: PropTypes.object.isRequired, isAuthenticated: PropTypes.bool, mouseTool: PropTypes.string, pubSub: PropTypes.object.isRequired,