From 681fe7496121beac5d02ebeab44d7984b2622817 Mon Sep 17 00:00:00 2001
From: Albert Cheng <albertwcheng@gmail.com>
Date: Thu, 18 Nov 2010 02:33:48 -0500
Subject: [PATCH] change sheband to /usr/bin/env python for python scripts

---
 AudicClaverieStatInterface.py                     | 2 +-
 ConvertBioBaseToTab.py                            | 2 +-
 GOCat.py                                          | 2 +-
 GOEnrichment.py                                   | 2 +-
 GOFRACT.py                                        | 2 +-
 GOplot.py                                         | 2 +-
 JGOEnrichment.py                                  | 2 +-
 JMGOEnrichment.py                                 | 2 +-
 ListPermuter.py                                   | 2 +-
 ParseGOTree.py                                    | 2 +-
 ProbeSelect.py                                    | 2 +-
 RACorrelation.py                                  | 2 +-
 RefGeneTable2sGFF3.py                             | 2 +-
 TMMNormalization.py                               | 2 +-
 TopGroupOutlierCount.py                           | 2 +-
 TopGroupsFromAtrCdt.py                            | 2 +-
 absdirname.py                                     | 2 +-
 addIndexToCol.py                                  | 2 +-
 assembleTranscriptsFromMAFStitchedContigBedSeq.py | 2 +-
 attachWelchpValue.py                              | 2 +-
 colSelect.py                                      | 2 +-
 colStat.py                                        | 2 +-
 collapseProbes.py                                 | 2 +-
 collapseSamples.py                                | 2 +-
 compareLists.py                                   | 2 +-
 convertEricTandemUTRIntoUniqRegions.py            | 2 +-
 convertPSL2BED.py                                 | 2 +-
 convertTab2Pssm.py                                | 2 +-
 csfas2fas.py                                      | 2 +-
 cuta.py                                           | 2 +-
 dissociateColValues.py                            | 2 +-
 drawNLinesWithoutReplacement.py                   | 2 +-
 easyClusterGenesOnEbed.py                         | 2 +-
 ebed2GenePred.py                                  | 2 +-
 expandExpValueOnBinVector.py                      | 2 +-
 extractBlockFromMemeOutput.py                     | 2 +-
 fasta2seq.py                                      | 2 +-
 findMaxPvalueForFDRCutOff.py                      | 2 +-
 genePred2RefGene.py                               | 2 +-
 getOverlappingPiecesOfIntervals.py                | 2 +-
 getPhastConMatrix.py                              | 2 +-
 getRatios.py                                      | 2 +-
 guessFastQType.py                                 | 2 +-
 initExpressionProcessing.py                       | 2 +-
 joinBedByOverlap (copy).py                        | 2 +-
 joinBedByOverlap.py                               | 2 +-
 joinu.py                                          | 2 +-
 langsrud_fisher.py                                | 2 +-
 listCount.py                                      | 2 +-
 makeBedGraph.py                                   | 2 +-
 makeFastaFileFromCols.py                          | 2 +-
 makeSifNodeAndEdgeAttributeFiles.py               | 2 +-
 makeTranscriptExonStringFromGff.py                | 2 +-
 mapFeatureViaRgAnnotationToGenomicBed.py          | 2 +-
 mergeIntervals.py                                 | 2 +-
 mkdir.py                                          | 2 +-
 motifAlignment2TOMTOM.py                          | 2 +-
 motifAlignment2TOMTOM2.py                         | 2 +-
 motifEnrichment.py                                | 2 +-
 motifSplidarGetFasta.py                           | 2 +-
 naiveMapping.py                                   | 2 +-
 plotCDF.py                                        | 2 +-
 plotCorScatter.py                                 | 2 +-
 plotExpBox.py                                     | 2 +-
 plotExpBox2 (copy).py                             | 2 +-
 plotExpBox3.py                                    | 2 +-
 plotRatioStatGeneExpression.py                    | 2 +-
 plotRatioStatGeneExpression2.py                   | 2 +-
 plotRatioStatGeneExpression3.py                   | 2 +-
 plotRatioStatGeneExpression4.py                   | 2 +-
 plotScatter.py                                    | 2 +-
 processmirBaseFA.py                               | 2 +-
 produceMISOInput.py                               | 2 +-
 produceMISOInput2.py                              | 2 +-
 pvalue_module.py                                  | 2 +-
 pyClusterArray.py                                 | 2 +-
 pyeval.py                                         | 2 +-
 quantileNormalize.py                              | 2 +-
 rankExpression.py                                 | 2 +-
 removeInvalidCharactersFromSeq.py                 | 2 +-
 replacer.py                                       | 2 +-
 reverseComplement.py                              | 2 +-
 rowwiseZScoreTransform.py                         | 2 +-
 selectRowsByBinaryVector.py                       | 2 +-
 selectRowsByRowNumbers.py                         | 2 +-
 simpleBedOverlap (copy).py                        | 2 +-
 simpleBedOverlap.py                               | 2 +-
 splitFasReads.py                                  | 2 +-
 splitlines.py                                     | 2 +-
 stickColValues.py                                 | 2 +-
 stitchMAFIntoContigBedSeq.py                      | 2 +-
 subtractSets.py                                   | 2 +-
 transformToPercentile.py                          | 2 +-
 transposeMatrix.py                                | 2 +-
 trimCLIPAdapters.py                               | 2 +-
 trimReads.py                                      | 2 +-
 truncateFasReads.py                               | 2 +-
 uniqa.py                                          | 2 +-
 uniteIDs.py                                       | 2 +-
 validateTermsNonParental.py                       | 2 +-
 100 files changed, 100 insertions(+), 100 deletions(-)

diff --git a/AudicClaverieStatInterface.py b/AudicClaverieStatInterface.py
index 61078d9..c84a2a1 100755
--- a/AudicClaverieStatInterface.py
+++ b/AudicClaverieStatInterface.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/ConvertBioBaseToTab.py b/ConvertBioBaseToTab.py
index b2c5fe0..83d6aca 100755
--- a/ConvertBioBaseToTab.py
+++ b/ConvertBioBaseToTab.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/GOCat.py b/GOCat.py
index 0fd2670..b56dad8 100755
--- a/GOCat.py
+++ b/GOCat.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/GOEnrichment.py b/GOEnrichment.py
index dfd8fe3..ef7804b 100755
--- a/GOEnrichment.py
+++ b/GOEnrichment.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/GOFRACT.py b/GOFRACT.py
index 2991c54..aff3dee 100755
--- a/GOFRACT.py
+++ b/GOFRACT.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/GOplot.py b/GOplot.py
index 1b2078b..22b6872 100755
--- a/GOplot.py
+++ b/GOplot.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/JGOEnrichment.py b/JGOEnrichment.py
index 9e5d98f..71793d5 100755
--- a/JGOEnrichment.py
+++ b/JGOEnrichment.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/JMGOEnrichment.py b/JMGOEnrichment.py
index e35bbbf..b950a55 100755
--- a/JMGOEnrichment.py
+++ b/JMGOEnrichment.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/ListPermuter.py b/ListPermuter.py
index 3e8e613..c9317ca 100755
--- a/ListPermuter.py
+++ b/ListPermuter.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/ParseGOTree.py b/ParseGOTree.py
index f9ce378..7043b44 100755
--- a/ParseGOTree.py
+++ b/ParseGOTree.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/ProbeSelect.py b/ProbeSelect.py
index ab4b126..ada0c1a 100755
--- a/ProbeSelect.py
+++ b/ProbeSelect.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/RACorrelation.py b/RACorrelation.py
index 5a8aef6..5455d79 100755
--- a/RACorrelation.py
+++ b/RACorrelation.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/RefGeneTable2sGFF3.py b/RefGeneTable2sGFF3.py
index a1048fe..7bb687d 100755
--- a/RefGeneTable2sGFF3.py
+++ b/RefGeneTable2sGFF3.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/TMMNormalization.py b/TMMNormalization.py
index 204f38d..9fa2811 100755
--- a/TMMNormalization.py
+++ b/TMMNormalization.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/TopGroupOutlierCount.py b/TopGroupOutlierCount.py
index 4396743..746b7c1 100755
--- a/TopGroupOutlierCount.py
+++ b/TopGroupOutlierCount.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/TopGroupsFromAtrCdt.py b/TopGroupsFromAtrCdt.py
index 0fc70dc..63a0f6d 100755
--- a/TopGroupsFromAtrCdt.py
+++ b/TopGroupsFromAtrCdt.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/absdirname.py b/absdirname.py
index d556c7e..d339576 100755
--- a/absdirname.py
+++ b/absdirname.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/addIndexToCol.py b/addIndexToCol.py
index 2dc7f37..1195845 100755
--- a/addIndexToCol.py
+++ b/addIndexToCol.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/assembleTranscriptsFromMAFStitchedContigBedSeq.py b/assembleTranscriptsFromMAFStitchedContigBedSeq.py
index 64d960f..23be36e 100755
--- a/assembleTranscriptsFromMAFStitchedContigBedSeq.py
+++ b/assembleTranscriptsFromMAFStitchedContigBedSeq.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/attachWelchpValue.py b/attachWelchpValue.py
index bd88ebf..fe1b70f 100755
--- a/attachWelchpValue.py
+++ b/attachWelchpValue.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/colSelect.py b/colSelect.py
index 83f5098..41ee079 100755
--- a/colSelect.py
+++ b/colSelect.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/colStat.py b/colStat.py
index 9ce78a0..fe7d349 100755
--- a/colStat.py
+++ b/colStat.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 colStat.py
diff --git a/collapseProbes.py b/collapseProbes.py
index db9e58e..bb7f9e3 100755
--- a/collapseProbes.py
+++ b/collapseProbes.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
  collapseProbe.py
diff --git a/collapseSamples.py b/collapseSamples.py
index 2a334b5..a9f19d0 100755
--- a/collapseSamples.py
+++ b/collapseSamples.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 # collapse samples!
 #
 #
diff --git a/compareLists.py b/compareLists.py
index 0e910fa..2382a40 100755
--- a/compareLists.py
+++ b/compareLists.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/convertEricTandemUTRIntoUniqRegions.py b/convertEricTandemUTRIntoUniqRegions.py
index 598fdba..2bd0f82 100755
--- a/convertEricTandemUTRIntoUniqRegions.py
+++ b/convertEricTandemUTRIntoUniqRegions.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/convertPSL2BED.py b/convertPSL2BED.py
index 82e4c76..0e5c74d 100755
--- a/convertPSL2BED.py
+++ b/convertPSL2BED.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/convertTab2Pssm.py b/convertTab2Pssm.py
index 17a7d19..cf1dd43 100755
--- a/convertTab2Pssm.py
+++ b/convertTab2Pssm.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 #convertTab2Pssm.py
 '''
diff --git a/csfas2fas.py b/csfas2fas.py
index 4d1e17a..7b1a1ce 100755
--- a/csfas2fas.py
+++ b/csfas2fas.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/cuta.py b/cuta.py
index 4661ea6..7823afa 100755
--- a/cuta.py
+++ b/cuta.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 cuta.py
diff --git a/dissociateColValues.py b/dissociateColValues.py
index 9f60cbc..5f0b6bf 100755
--- a/dissociateColValues.py
+++ b/dissociateColValues.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/drawNLinesWithoutReplacement.py b/drawNLinesWithoutReplacement.py
index b152ce4..eb1992f 100755
--- a/drawNLinesWithoutReplacement.py
+++ b/drawNLinesWithoutReplacement.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 '''
 
 
diff --git a/easyClusterGenesOnEbed.py b/easyClusterGenesOnEbed.py
index 0cb7370..42c1efd 100755
--- a/easyClusterGenesOnEbed.py
+++ b/easyClusterGenesOnEbed.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/ebed2GenePred.py b/ebed2GenePred.py
index 24e93cf..1517ef4 100755
--- a/ebed2GenePred.py
+++ b/ebed2GenePred.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/expandExpValueOnBinVector.py b/expandExpValueOnBinVector.py
index ea9933f..8bb009d 100755
--- a/expandExpValueOnBinVector.py
+++ b/expandExpValueOnBinVector.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/extractBlockFromMemeOutput.py b/extractBlockFromMemeOutput.py
index f7b7008..5c4a4e3 100755
--- a/extractBlockFromMemeOutput.py
+++ b/extractBlockFromMemeOutput.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/fasta2seq.py b/fasta2seq.py
index 0aca7fc..b761600 100755
--- a/fasta2seq.py
+++ b/fasta2seq.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 
 '''
diff --git a/findMaxPvalueForFDRCutOff.py b/findMaxPvalueForFDRCutOff.py
index d0c16f9..d48abf1 100755
--- a/findMaxPvalueForFDRCutOff.py
+++ b/findMaxPvalueForFDRCutOff.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/genePred2RefGene.py b/genePred2RefGene.py
index ed8a252..13bc6db 100755
--- a/genePred2RefGene.py
+++ b/genePred2RefGene.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/getOverlappingPiecesOfIntervals.py b/getOverlappingPiecesOfIntervals.py
index 7afb593..e9e137e 100755
--- a/getOverlappingPiecesOfIntervals.py
+++ b/getOverlappingPiecesOfIntervals.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/getPhastConMatrix.py b/getPhastConMatrix.py
index f4a2fb5..f41191a 100755
--- a/getPhastConMatrix.py
+++ b/getPhastConMatrix.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 import warnings
 warnings.filterwarnings("ignore",category=DeprecationWarning)
diff --git a/getRatios.py b/getRatios.py
index 2e6ec7a..68e095b 100755
--- a/getRatios.py
+++ b/getRatios.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 
 '''
diff --git a/guessFastQType.py b/guessFastQType.py
index b8a7a4d..1c86ed9 100755
--- a/guessFastQType.py
+++ b/guessFastQType.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/initExpressionProcessing.py b/initExpressionProcessing.py
index 6afb329..fd6df92 100755
--- a/initExpressionProcessing.py
+++ b/initExpressionProcessing.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/joinBedByOverlap (copy).py b/joinBedByOverlap (copy).py
index cb0f0be..de0808c 100755
--- a/joinBedByOverlap (copy).py	
+++ b/joinBedByOverlap (copy).py	
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/joinBedByOverlap.py b/joinBedByOverlap.py
index ca6f4cb..0e92cb4 100755
--- a/joinBedByOverlap.py
+++ b/joinBedByOverlap.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/joinu.py b/joinu.py
index 443b393..fb160c6 100755
--- a/joinu.py
+++ b/joinu.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/langsrud_fisher.py b/langsrud_fisher.py
index 939cc91..9c6495b 100755
--- a/langsrud_fisher.py
+++ b/langsrud_fisher.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/listCount.py b/listCount.py
index 9fcde0c..aef1885 100755
--- a/listCount.py
+++ b/listCount.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/makeBedGraph.py b/makeBedGraph.py
index 340bd2c..f21375b 100755
--- a/makeBedGraph.py
+++ b/makeBedGraph.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/makeFastaFileFromCols.py b/makeFastaFileFromCols.py
index 3c6f0af..ea5d7db 100755
--- a/makeFastaFileFromCols.py
+++ b/makeFastaFileFromCols.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/makeSifNodeAndEdgeAttributeFiles.py b/makeSifNodeAndEdgeAttributeFiles.py
index 74604c6..9621441 100755
--- a/makeSifNodeAndEdgeAttributeFiles.py
+++ b/makeSifNodeAndEdgeAttributeFiles.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/makeTranscriptExonStringFromGff.py b/makeTranscriptExonStringFromGff.py
index 33c957a..73e06a7 100755
--- a/makeTranscriptExonStringFromGff.py
+++ b/makeTranscriptExonStringFromGff.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/mapFeatureViaRgAnnotationToGenomicBed.py b/mapFeatureViaRgAnnotationToGenomicBed.py
index 8f7e804..cef4d4d 100755
--- a/mapFeatureViaRgAnnotationToGenomicBed.py
+++ b/mapFeatureViaRgAnnotationToGenomicBed.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/mergeIntervals.py b/mergeIntervals.py
index 139da87..30961e9 100755
--- a/mergeIntervals.py
+++ b/mergeIntervals.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/mkdir.py b/mkdir.py
index 6c1c8e1..d92f993 100755
--- a/mkdir.py
+++ b/mkdir.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/motifAlignment2TOMTOM.py b/motifAlignment2TOMTOM.py
index 1bdeae9..cf43eaa 100755
--- a/motifAlignment2TOMTOM.py
+++ b/motifAlignment2TOMTOM.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/motifAlignment2TOMTOM2.py b/motifAlignment2TOMTOM2.py
index 1bdeae9..cf43eaa 100755
--- a/motifAlignment2TOMTOM2.py
+++ b/motifAlignment2TOMTOM2.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/motifEnrichment.py b/motifEnrichment.py
index 684e210..d0239ab 100755
--- a/motifEnrichment.py
+++ b/motifEnrichment.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/motifSplidarGetFasta.py b/motifSplidarGetFasta.py
index 117998c..3698349 100755
--- a/motifSplidarGetFasta.py
+++ b/motifSplidarGetFasta.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/naiveMapping.py b/naiveMapping.py
index d2a5817..4952092 100755
--- a/naiveMapping.py
+++ b/naiveMapping.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotCDF.py b/plotCDF.py
index 2386e08..827b660 100755
--- a/plotCDF.py
+++ b/plotCDF.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotCorScatter.py b/plotCorScatter.py
index 3d0e628..7555918 100755
--- a/plotCorScatter.py
+++ b/plotCorScatter.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotExpBox.py b/plotExpBox.py
index 2fb903f..e31100d 100755
--- a/plotExpBox.py
+++ b/plotExpBox.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotExpBox2 (copy).py b/plotExpBox2 (copy).py
index f0c27ca..4466b3b 100755
--- a/plotExpBox2 (copy).py	
+++ b/plotExpBox2 (copy).py	
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 from pylab import *
 from sys import stderr,stdout,argv
diff --git a/plotExpBox3.py b/plotExpBox3.py
index 9e560d9..dbf4655 100755
--- a/plotExpBox3.py
+++ b/plotExpBox3.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotRatioStatGeneExpression.py b/plotRatioStatGeneExpression.py
index 4543f8a..6b1790f 100755
--- a/plotRatioStatGeneExpression.py
+++ b/plotRatioStatGeneExpression.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotRatioStatGeneExpression2.py b/plotRatioStatGeneExpression2.py
index f418e90..229bec4 100755
--- a/plotRatioStatGeneExpression2.py
+++ b/plotRatioStatGeneExpression2.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotRatioStatGeneExpression3.py b/plotRatioStatGeneExpression3.py
index c226f64..c7696af 100755
--- a/plotRatioStatGeneExpression3.py
+++ b/plotRatioStatGeneExpression3.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotRatioStatGeneExpression4.py b/plotRatioStatGeneExpression4.py
index c226f64..c7696af 100755
--- a/plotRatioStatGeneExpression4.py
+++ b/plotRatioStatGeneExpression4.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/plotScatter.py b/plotScatter.py
index f0404ea..ad13a8c 100755
--- a/plotScatter.py
+++ b/plotScatter.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/processmirBaseFA.py b/processmirBaseFA.py
index 2cce635..8f26b22 100755
--- a/processmirBaseFA.py
+++ b/processmirBaseFA.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/produceMISOInput.py b/produceMISOInput.py
index 977346a..136f1f4 100755
--- a/produceMISOInput.py
+++ b/produceMISOInput.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/produceMISOInput2.py b/produceMISOInput2.py
index b4c72f1..050b2a2 100755
--- a/produceMISOInput2.py
+++ b/produceMISOInput2.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/pvalue_module.py b/pvalue_module.py
index ceda2a7..c7d4cb2 100755
--- a/pvalue_module.py
+++ b/pvalue_module.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/pyClusterArray.py b/pyClusterArray.py
index 5beee45..2415231 100755
--- a/pyClusterArray.py
+++ b/pyClusterArray.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 
 '''
diff --git a/pyeval.py b/pyeval.py
index 46309db..0219da5 100755
--- a/pyeval.py
+++ b/pyeval.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/quantileNormalize.py b/quantileNormalize.py
index 4b98f1e..fb6aea7 100755
--- a/quantileNormalize.py
+++ b/quantileNormalize.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/rankExpression.py b/rankExpression.py
index f68ad8b..f960115 100755
--- a/rankExpression.py
+++ b/rankExpression.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/removeInvalidCharactersFromSeq.py b/removeInvalidCharactersFromSeq.py
index 8c66fd1..2f3ffb7 100755
--- a/removeInvalidCharactersFromSeq.py
+++ b/removeInvalidCharactersFromSeq.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/replacer.py b/replacer.py
index 9b663a8..76a14a2 100755
--- a/replacer.py
+++ b/replacer.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/reverseComplement.py b/reverseComplement.py
index 48431f9..56072eb 100755
--- a/reverseComplement.py
+++ b/reverseComplement.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 '''
 Copyright 2010 Wu Albert Cheng <albertwcheng@gmail.com>
 
diff --git a/rowwiseZScoreTransform.py b/rowwiseZScoreTransform.py
index da24bb0..5f4e197 100755
--- a/rowwiseZScoreTransform.py
+++ b/rowwiseZScoreTransform.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/selectRowsByBinaryVector.py b/selectRowsByBinaryVector.py
index 165d098..07a9fb4 100755
--- a/selectRowsByBinaryVector.py
+++ b/selectRowsByBinaryVector.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/selectRowsByRowNumbers.py b/selectRowsByRowNumbers.py
index fb0375e..911afc7 100755
--- a/selectRowsByRowNumbers.py
+++ b/selectRowsByRowNumbers.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/simpleBedOverlap (copy).py b/simpleBedOverlap (copy).py
index 18cb975..904b56f 100755
--- a/simpleBedOverlap (copy).py	
+++ b/simpleBedOverlap (copy).py	
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 #simpleBedOverlap.py
 from sys import *
diff --git a/simpleBedOverlap.py b/simpleBedOverlap.py
index 6f77129..63def95 100755
--- a/simpleBedOverlap.py
+++ b/simpleBedOverlap.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/splitFasReads.py b/splitFasReads.py
index eaa7c65..9c40817 100755
--- a/splitFasReads.py
+++ b/splitFasReads.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/splitlines.py b/splitlines.py
index a7a2a62..860c069 100755
--- a/splitlines.py
+++ b/splitlines.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/stickColValues.py b/stickColValues.py
index 3c094b1..c754df6 100755
--- a/stickColValues.py
+++ b/stickColValues.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/stitchMAFIntoContigBedSeq.py b/stitchMAFIntoContigBedSeq.py
index 346ec42..94be187 100755
--- a/stitchMAFIntoContigBedSeq.py
+++ b/stitchMAFIntoContigBedSeq.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/subtractSets.py b/subtractSets.py
index 1f0e6b5..227dcc6 100755
--- a/subtractSets.py
+++ b/subtractSets.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/transformToPercentile.py b/transformToPercentile.py
index ba6e627..ea7a0ab 100755
--- a/transformToPercentile.py
+++ b/transformToPercentile.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/transposeMatrix.py b/transposeMatrix.py
index 3b95f90..4b269a3 100755
--- a/transposeMatrix.py
+++ b/transposeMatrix.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/trimCLIPAdapters.py b/trimCLIPAdapters.py
index 226da0e..97973d6 100755
--- a/trimCLIPAdapters.py
+++ b/trimCLIPAdapters.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 
 '''
diff --git a/trimReads.py b/trimReads.py
index b5a58ad..37f1a12 100755
--- a/trimReads.py
+++ b/trimReads.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/truncateFasReads.py b/truncateFasReads.py
index d418fc4..05adbc8 100755
--- a/truncateFasReads.py
+++ b/truncateFasReads.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/uniqa.py b/uniqa.py
index 9b67c4e..9e405bb 100755
--- a/uniqa.py
+++ b/uniqa.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/uniteIDs.py b/uniteIDs.py
index 6f76c58..7639269 100755
--- a/uniteIDs.py
+++ b/uniteIDs.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''
 
diff --git a/validateTermsNonParental.py b/validateTermsNonParental.py
index fd0df50..9878c23 100755
--- a/validateTermsNonParental.py
+++ b/validateTermsNonParental.py
@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/usr/bin/env python
 
 '''