utils_glue.py

import os
import logging
import sys
import csv

from scipy.stats import pearsonr, spearmanr
from sklearn.metrics import matthews_corrcoef, f1_score

logger = logging.getLogger()

class InputExample(object):
    """A single training/test example for simple sequence classification."""

    def __init__(self, guid, text_a, text_b=None, label=None):
        """Constructs a InputExample.

        Args:
            guid: Unique id for the example.
            text_a: string. The untokenized text of the first sequence. For single
            sequence tasks, only this sequence must be specified.
            text_b: (Optional) string. The untokenized text of the second sequence.
            Only must be specified for sequence pair tasks.
            label: (Optional) string. The label of the example. This should be
            specified for train and dev examples, but not for test examples.
        """
        self.guid = guid
        self.text_a = text_a
        self.text_b = text_b
        self.label = label


class InputFeatures(object):
    """A single set of features of data."""

    def __init__(self, input_ids, input_mask, segment_ids, label_id, seq_length=None):
        self.input_ids = input_ids
        self.input_mask = input_mask
        self.segment_ids = segment_ids
        self.seq_length = seq_length
        self.label_id = label_id


class DataProcessor(object):
    """Base class for data converters for sequence classification data sets."""

    def get_train_examples(self, data_dir):
        """Gets a collection of `InputExample`s for the train set."""
        raise NotImplementedError()

    def get_dev_examples(self, data_dir):
        """Gets a collection of `InputExample`s for the dev set."""
        raise NotImplementedError()
        
    def get_test_examples(self, data_dir):
        """Gets a collection of `InputExample`s for the test set."""
        raise NotImplementedError()

    def get_labels(self):
        """Gets the list of labels for this data set."""
        raise NotImplementedError()

    @classmethod
    def _read_tsv(cls, input_file, quotechar=None):
        """Reads a tab separated value file."""
        with open(input_file, "r", encoding="utf-8") as f:
            reader = csv.reader(f, delimiter="\t", quotechar=quotechar)
            lines = []
            for line in reader:
                if sys.version_info[0] == 2:
                    line = list(unicode(cell, 'utf-8') for cell in line)
                lines.append(line)
            return lines


class MrpcProcessor(DataProcessor):
    """Processor for the MRPC data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["0", "1"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, i)
            text_a = line[3]
            text_b = line[4]
            if set_type == 'test':
                label = None
            else:
                label = line[0]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class MnliProcessor(DataProcessor):
    """Processor for the MultiNLI data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev_matched.tsv")),
            "dev_matched")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test_matched.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["contradiction", "entailment", "neutral"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            text_a = line[8]
            text_b = line[9]
            if set_type == 'test':
                label = None
            else:
                label = line[-1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class MnliMismatchedProcessor(MnliProcessor):
    """Processor for the MultiNLI Mismatched data set (GLUE version)."""

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev_mismatched.tsv")),
            "dev_matched")
    def get_test_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test_mismatched.tsv")),
            "test")


class ColaProcessor(DataProcessor):
    """Processor for the CoLA data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["0", "1"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        if set_type == 'test':
            for (i, line) in enumerate(lines):
                if i == 0:
                    continue
                guid = "%s-%s" % (set_type, i)
                text_a = line[1]
                label = None
                examples.append(
                    InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
        else:
            for (i, line) in enumerate(lines):
                guid = "%s-%s" % (set_type, i)
                text_a = line[3]
                label = line[1]
                examples.append(
                    InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
        return examples


class Sst2Processor(DataProcessor):
    """Processor for the SST-2 data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["0", "1"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, i)
            if set_type == 'test':
                text_a = line[1]
                label = None
            else:
                text_a = line[0]
                label = line[1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
        return examples


class StsbProcessor(DataProcessor):
    """Processor for the STS-B data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return [None]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            text_a = line[7]
            text_b = line[8]
            if set_type== 'test':
                label = None
            else:
                label = line[-1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class QqpProcessor(DataProcessor):
    """Processor for the STS-B data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["0", "1"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            try:
                if set_type=='test':
                    text_a = line[1]
                    text_b = line[2]
                    label = None
                else:
                    text_a = line[3]
                    text_b = line[4]
                    label = line[5]
            except IndexError:
                continue
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class QnliProcessor(DataProcessor):
    """Processor for the STS-B data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")),
            "dev_matched")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["entailment", "not_entailment"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            if set_type=='test':
                text_a = line[1]
                text_b = line[2]
                label = None
            else:
                text_a = line[1]
                text_b = line[2]
                label = line[-1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class RteProcessor(DataProcessor):
    """Processor for the RTE data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
    
    def get_test_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")

    def get_aug_examples(self, data_dir):
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train_aug.tsv")), "aug")

    def get_labels(self):
        """See base class."""
        return ["entailment", "not_entailment"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            if set_type=='test':
                text_a = line[1]
                text_b = line[2]
                label = None
            else:
                text_a = line[1]
                text_b = line[2]
                label = line[-1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


class WnliProcessor(DataProcessor):
    """Processor for the WNLI data set (GLUE version)."""

    def get_train_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")

    def get_dev_examples(self, data_dir):
        """See base class."""
        return self._create_examples(
            self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")

    def get_labels(self):
        """See base class."""
        return ["0", "1"]

    def _create_examples(self, lines, set_type):
        """Creates examples for the training and dev sets."""
        examples = []
        for (i, line) in enumerate(lines):
            if i == 0:
                continue
            guid = "%s-%s" % (set_type, line[0])
            text_a = line[1]
            text_b = line[2]
            label = line[-1]
            examples.append(
                InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
        return examples


def convert_examples_to_features(examples, label_list, max_seq_length,
                                 tokenizer, output_mode):
    """Loads a data file into a list of `InputBatch`s."""

    label_map = {label: i for i, label in enumerate(label_list)}

    features = []
    for (ex_index, example) in enumerate(examples):
        if ex_index % 10000 == 0:
            logger.info("Writing example %d of %d" % (ex_index, len(examples)))

        tokens_a = tokenizer.tokenize(example.text_a)

        tokens_b = None
        if example.text_b:
            tokens_b = tokenizer.tokenize(example.text_b)
            _truncate_seq_pair(tokens_a, tokens_b, max_seq_length - 3)
        else:
            if len(tokens_a) > max_seq_length - 2:
                tokens_a = tokens_a[:(max_seq_length - 2)]

        tokens = ["[CLS]"] + tokens_a + ["[SEP]"]
        segment_ids = [0] * len(tokens)

        if tokens_b:
            tokens += tokens_b + ["[SEP]"]
            segment_ids += [1] * (len(tokens_b) + 1)

        input_ids = tokenizer.convert_tokens_to_ids(tokens)
        input_mask = [1] * len(input_ids)
        seq_length = len(input_ids)

        padding = [0] * (max_seq_length - len(input_ids))
        input_ids += padding
        input_mask += padding
        segment_ids += padding

        assert len(input_ids) == max_seq_length
        assert len(input_mask) == max_seq_length
        assert len(segment_ids) == max_seq_length
        try:
            if output_mode == "classification":
                label_id = label_map[example.label]
            elif output_mode == "regression":
                label_id = float(example.label)
            else:
                raise KeyError(output_mode)
        except:
            label_id = 0

        if ex_index < 1:
            logger.info("*** Example ***")
            logger.info("guid: %s" % (example.guid))
            logger.info("tokens: %s" % " ".join(
                [str(x) for x in tokens]))
            logger.info("input_ids: %s" % " ".join([str(x) for x in input_ids]))
            logger.info("input_mask: %s" % " ".join([str(x) for x in input_mask]))
            logger.info(
                "segment_ids: %s" % " ".join([str(x) for x in segment_ids]))
            logger.info("label: {}".format(example.label))
            logger.info("label_id: {}".format(label_id))

        features.append(
            InputFeatures(input_ids=input_ids,
                          input_mask=input_mask,
                          segment_ids=segment_ids,
                          label_id=label_id,
                          seq_length=seq_length))
    return features


def _truncate_seq_pair(tokens_a, tokens_b, max_length):
    """Truncates a sequence pair in place to the maximum length."""
    while True:
        total_length = len(tokens_a) + len(tokens_b)
        if total_length <= max_length:
            break
        if len(tokens_a) > len(tokens_b):
            tokens_a.pop()
        else:
            tokens_b.pop()


def simple_accuracy(preds, labels):
    return (preds == labels).mean()


def acc_and_f1(preds, labels):
    acc = simple_accuracy(preds, labels)
    f1 = f1_score(y_true=labels, y_pred=preds)
    return {
        "acc": acc,
        "f1": f1,
        "acc_and_f1": (acc + f1) / 2,
    }


def pearson_and_spearman(preds, labels):
    pearson_corr = pearsonr(preds, labels)[0]
    spearman_corr = spearmanr(preds, labels)[0]
    return {
        "pearson": pearson_corr,
        "spearmanr": spearman_corr,
        "corr": (pearson_corr + spearman_corr) / 2,
    }


def compute_metrics(task_name, preds, labels):
    assert len(preds) == len(labels)
    if task_name == "cola":
        return {"mcc": matthews_corrcoef(labels, preds)}
    elif task_name == "sst-2":
        return {"acc": simple_accuracy(preds, labels)}
    elif task_name == "mrpc":
        return acc_and_f1(preds, labels)
    elif task_name == "sts-b":
        return pearson_and_spearman(preds, labels)
    elif task_name == "qqp":
        return acc_and_f1(preds, labels)
    elif task_name == "mnli":
        return {"acc": simple_accuracy(preds, labels)}
    elif task_name == "mnli-mm":
        return {"acc": simple_accuracy(preds, labels)}
    elif task_name == "qnli":
        return {"acc": simple_accuracy(preds, labels)}
    elif task_name == "rte":
        return {"acc": simple_accuracy(preds, labels)}
    elif task_name == "wnli":
        return {"acc": simple_accuracy(preds, labels)}
    else:
        raise KeyError(task_name)