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ORFmine_env.yml
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ORFmine_env.yml
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name: ORFmine_env
channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.3=py310h5764c6d_0
- aiosignal=1.2.0=pyhd8ed1ab_0
- alsa-lib=1.2.3.2=h166bdaf_0
- amply=0.1.5=pyhd8ed1ab_0
- aom=3.3.0=h27087fc_1
- appdirs=1.4.4=pyh9f0ad1d_0
- argcomplete=2.0.0=pyhd8ed1ab_0
- argh=0.26.2=pyh9f0ad1d_1002
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=22.1.0=pyh71513ae_1
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.2=py310h5764c6d_0
- binutils_impl_linux-64=2.39=h6ceecb4_0
- binutils_linux-64=2.39=h5fc0e48_11
- bioconductor-annotationdbi=1.56.2=r41hdfd78af_0
- bioconductor-biobase=2.54.0=r41hc0cfd56_2
- bioconductor-biocfilecache=2.2.0=r41hdfd78af_0
- bioconductor-biocgenerics=0.40.0=r41hdfd78af_0
- bioconductor-biocio=1.4.0=r41hdfd78af_0
- bioconductor-biocparallel=1.28.3=r41hc247a5b_1
- bioconductor-biomart=2.50.0=r41hdfd78af_0
- bioconductor-biostrings=2.62.0=r41hc0cfd56_2
- bioconductor-delayedarray=0.20.0=r41hc0cfd56_2
- bioconductor-genomeinfodb=1.30.1=r41hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.6=r41hdfd78af_0
- bioconductor-genomicalignments=1.30.0=r41hc0cfd56_2
- bioconductor-genomicfeatures=1.46.1=r41hdfd78af_0
- bioconductor-genomicranges=1.46.1=r41hc0cfd56_1
- bioconductor-iranges=2.28.0=r41hc0cfd56_2
- bioconductor-keggrest=1.34.0=r41hdfd78af_0
- bioconductor-matrixgenerics=1.6.0=r41hdfd78af_0
- bioconductor-rhtslib=1.26.0=r41hc0cfd56_2
- bioconductor-rsamtools=2.10.0=r41hc247a5b_2
- bioconductor-rtracklayer=1.54.0=r41h171f361_4
- bioconductor-s4vectors=0.32.4=r41hc0cfd56_0
- bioconductor-summarizedexperiment=1.24.0=r41hdfd78af_0
- bioconductor-xvector=0.34.0=r41hc0cfd56_2
- bioconductor-zlibbioc=1.40.0=r41hc0cfd56_2
- biopython=1.79=py310h5764c6d_2
- blast=2.13.0=hf3cf87c_0
- boto3=1.25.1=pyhd8ed1ab_0
- botocore=1.28.1=pyhd8ed1ab_0
- bowtie2=2.4.5=py310h8d7afc0_4
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cachetools=5.2.0=pyhd8ed1ab_0
- cairo=1.16.0=ha12eb4b_1010
- cairocffi=1.3.0=pyhd8ed1ab_0
- cairosvg=2.5.2=pyhd8ed1ab_0
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_2
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- coin-or-cbc=2.10.8=h3786ebc_0
- coin-or-cgl=0.60.6=h6f57e76_1
- coin-or-clp=1.17.7=h256e9bb_0
- coin-or-osi=0.108.7=h2720bb7_2
- coin-or-utils=2.11.6=h202d8b1_2
- coincbc=2.10.8=0_metapackage
- commonmark=0.9.1=py_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.0.5=py310hbf28c38_0
- cryptography=38.0.2=py310h597c629_1
- cssselect2=0.2.1=pyh9f0ad1d_1
- curl=7.86.0=h7bff187_0
- cutadapt=4.1=py310h1425a21_1
- cycler=0.11.0=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- datrie=0.8.2=py310h6acc77f_3
- dbus=1.13.6=h5008d03_3
- defusedxml=0.7.1=pyhd8ed1ab_0
- dendropy=4.5.2=pyh3252c3a_0
- dnaio=0.9.1=py310h1425a21_1
- docutils=0.19=py310hff52083_1
- dpath=2.0.6=py310hff52083_1
- dropbox=11.35.0=pyhd8ed1ab_0
- entrez-direct=16.2=he881be0_1
- ete3=3.1.2=pyh9f0ad1d_0
- exceptiongroup=1.0.0rc9=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fastqc=0.11.9=hdfd78af_1
- ffmpeg=4.4.1=hd7ab26d_2
- filechunkio=1.8=py_2
- filelock=3.8.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py310h5764c6d_0
- freeglut=3.2.2=h9c3ff4c_1
- freetype=2.12.1=hca18f0e_0
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.1=py310h5764c6d_1
- ftputil=5.0.4=pyhd8ed1ab_0
- future=0.18.2=pyhd8ed1ab_6
- gawk=5.1.0=h7f98852_0
- gcc_impl_linux-64=9.5.0=h99780fb_19
- gcc_linux-64=9.5.0=h4258300_11
- gdk-pixbuf=2.42.8=hff1cb4f_1
- gettext=0.21.1=h27087fc_0
- gffread=0.12.7=hd03093a_1
- gffutils=0.11.1=pyh7cba7a3_0
- gfortran_impl_linux-64=9.5.0=hf1096a2_19
- gfortran_linux-64=9.5.0=hdb51d14_11
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.29=pyhd8ed1ab_0
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- google-api-core=2.10.1=pyhd8ed1ab_0
- google-api-python-client=2.65.0=pyhd8ed1ab_0
- google-auth=2.13.0=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.5.0=pyh6c4a22f_0
- google-crc32c=1.1.2=py310he8fe98e_3
- google-resumable-media=2.4.0=pyhd8ed1ab_0
- googleapis-common-protos=1.56.4=py310hff52083_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=3.0.0=h5abf519_1
- grpc-cpp=1.48.1=hbad87ad_1
- grpcio=1.48.1=py310h946def9_1
- gsl=2.7=he838d99_0
- gst-plugins-base=1.18.5=hf529b03_3
- gstreamer=1.18.5=h9f60fe5_3
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h64030ff_2
- gxx_impl_linux-64=9.5.0=h99780fb_19
- gxx_linux-64=9.5.0=h43f449f_11
- harfbuzz=4.2.0=h40b6f09_0
- hdf5=1.12.1=nompi_h2386368_104
- hisat2=2.2.1=h87f3376_4
- htslib=1.14=h9753748_2
- httplib2=0.20.4=pyhd8ed1ab_0
- icu=69.1=h9c3ff4c_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=4.11.4=py310hff52083_0
- importlib_metadata=4.11.4=hd8ed1ab_0
- importlib_resources=5.10.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- isa-l=2.30.0=ha770c72_4
- jasper=2.0.33=ha77e612_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- jsonschema=4.16.0=pyhd8ed1ab_0
- jupyter_core=4.11.1=py310hff52083_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h166bdaf_1003
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.39=hc81fddc_0
- lerc=3.0=h9c3ff4c_0
- libabseil=20220623.0=cxx17_h48a1fff_4
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libclang=13.0.1=default_hc23dcda_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.86.0=h7bff187_0
- libdeflate=1.10=h7f98852_0
- libdrm=2.4.113=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=9.5.0=h0a57e50_19
- libgcc-ng=12.2.0=h65d4601_19
- libgd=2.3.3=h283352f_2
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgit2=1.5.0=h6529ace_0
- libglib=2.74.1=h7a41b64_0
- libglu=9.0.0=he1b5a44_1001
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm13=13.0.1=hf817b99_2
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopencv=4.5.5=py310hc83fb77_10
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.16=h516909a_0
- libpng=1.6.38=h753d276_0
- libpq=14.3=hd77ab85_0
- libprotobuf=3.20.1=h6239696_4
- librsvg=2.52.5=h0a9e6e8_3
- libsanitizer=9.5.0=h2f262e1_19
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=9.5.0=h0a57e50_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h0fcbabc_0
- libtool=2.4.6=h9c3ff4c_1008
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libva=2.16.0=h166bdaf_0
- libvorbis=1.3.7=h9c3ff4c_0
- libvpx=1.11.0=h9c3ff4c_3
- libwebp=1.2.4=h522a892_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h885dcf4_1
- libxslt=1.1.33=h0ef7038_3
- libzlib=1.2.13=h166bdaf_4
- lightgbm=3.3.3=py310hd8f1fbe_0
- logmuse=0.2.6=pyh8c360ce_0
- lxml=4.8.0=py310h5764c6d_2
- make=4.3=hd18ef5c_1
- markupsafe=2.1.1=py310h5764c6d_2
- matplotlib=3.6.0=py310hff52083_0
- matplotlib-base=3.6.0=py310h8d5ebf3_0
- multidict=6.0.2=py310h5764c6d_1
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.31=haf5c9bc_0
- mysql-libs=8.0.31=h28c427c_0
- nano=2.9.8=hddfc1eb_1001
- nbformat=5.7.0=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- nettle=3.6=he412f7d_0
- nspr=4.32=h9c3ff4c_1
- nss=3.74=hb5efdd6_0
- numpy=1.23.4=py310h53a5b5f_1
- oauth2client=4.1.3=py_0
- openh264=2.1.1=h780b84a_0
- openjdk=11.0.1=h516909a_1016
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1s=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.1=py310h769672d_0
- pandoc=2.19.2=h32600fe_1
- pango=1.50.7=hbd2fdc8_0
- paramiko=2.11.0=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pbzip2=1.1.13=0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.37=hc3806b6_1
- peppy=0.35.2=pyhd8ed1ab_0
- perl=5.32.1=2_h7f98852_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-common-sense=3.75=pl5321hd8ed1ab_0
- perl-compress-raw-bzip2=2.201=pl5321h166bdaf_0
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-encode=3.19=pl5321h166bdaf_0
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hd8ed1ab_0
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-io-compress=2.201=pl5321h87f3376_0
- perl-io-zlib=1.11=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- perl-parent=0.238=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321h166bdaf_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-storable=3.15=pl5321h166bdaf_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pigz=2.6=h27826a3_0
- pillow=9.2.0=py310hbd86126_2
- pip=22.3=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- pluggy=1.0.0=py310hff52083_4
- ply=3.11=py_1
- prettytable=3.4.1=pyhd8ed1ab_0
- protobuf=3.20.1=py310hd8f1fbe_0
- psutil=5.9.3=py310h5764c6d_1
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.6.0=py310hff52083_1
- py-opencv=4.5.5=py310hfdc917e_10
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
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