diff --git a/docs/css/extra.css b/docs/css/extra.css new file mode 100644 index 00000000..67905237 --- /dev/null +++ b/docs/css/extra.css @@ -0,0 +1,48 @@ + /* Style the button that is used to open and close the collapsible content */ + .collapsible { + /* background-color: #eee; */ + color: rgb(100, 100, 100); + cursor: pointer; + padding: 8px; + width: 100%; + border: none; + text-align: left; + outline: none; + font-size: 13px; + font-weight: 600; + + } + + + /* Add a background color to the button if it is clicked on (add the .active class with JS), and when you move the mouse over it (hover) */ + .active, .collapsible:hover { + background-color: rgba(204, 204, 204, 0.2); + } + + /* Style the collapsible content. Note: hidden by default */ + .content { + font-size: 13px; + padding: 0 12px; + max-height: 0; + transition: max-height 0.2s ease-out; + /* display: none; */ + overflow: hidden; + /* background-color: #f1f1f1; */ + } + + .affiliation { + padding: 5px; +} + +.arrow-down { + position: relative; + display: inline-block; + top: -1px; + margin-right: 4px; + width: 0; + height: 0; + border-left: 6px solid transparent; + border-right: 6px solid transparent; + + border-top: 6px solid black; +} diff --git a/docs/index.md b/docs/index.md index 848d2d79..58967780 100755 --- a/docs/index.md +++ b/docs/index.md @@ -1,15 +1,33 @@ -
+
-

-Authors: Chris Papadopoulos1, Nicolas Chevrollier, Anne Lopes1 -

+
+Chris Papadopoulos1, Nicolas Chevrollier2, Anne Lopes1
+
+ +
Affiliations
+
+
+
+ 1 Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France, anne.lopes@i2bc.paris-saclay.fr, + cgpapado.bio@gmail.com. +
+
+ 2 Independent bio-informatician, Paris, France, nicolas.chevrollier@laposte.net. +
+
+ + +
+ +
Recent studies attribute a new role to the noncoding genome in the production of novel peptides. The widespread transcription of noncoding regions and the pervasive translation of the resulting RNAs offer a vast reservoir of novel peptides to the organisms. + ORFmine is an open-source package that aims at extracting, annotating, and characterizing the fold potential and the structural properties of all Open Reading Frames (ORF) encoded in a genome (including coding and @@ -20,7 +38,7 @@ application). -

+
[ ![](./img/icons/Logo_ORFtrack.png){ width=30% }](./orftrack_description.md)
ORFtrack searches for all possible ORFs longer than 60 nucleotides in the six frames of an input @@ -33,7 +51,7 @@ In addition, their amino acid and/or nucleotide sequences can be extracted in a FASTA file (for more details, see the complete documentation of ORFtrack). -

+
[![](./img/icons/Logo_ORFold.png){ width=30% }](./Objective_orfold.md)
ORFold probes the fold potential and the disorder and aggregation @@ -51,7 +69,7 @@ properties along a genome in a genome viewer documentation of ORFold). -


+
#### References 1. Bitard-Feildel, T. & Callebaut, I. HCAtk and pyHCA: A Toolkit and Python API for the Hydrophobic Cluster Analysis of Protein Sequences. bioRxiv 249995 (2018). diff --git a/docs/js/extra.js b/docs/js/extra.js new file mode 100644 index 00000000..01aaa291 --- /dev/null +++ b/docs/js/extra.js @@ -0,0 +1,14 @@ +var coll = document.getElementsByClassName("collapsible"); +var i; + +for (i = 0; i < coll.length; i++) { + coll[i].addEventListener("click", function() { + this.classList.toggle("active"); + var content = this.nextElementSibling; + if (content.style.maxHeight){ + content.style.maxHeight = null; + } else { + content.style.maxHeight = content.scrollHeight + "px"; + } + }); +} \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index d463ff36..bf632afe 100755 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -39,3 +39,5 @@ markdown_extensions: use_directory_urls: false extra_css: - css/extra.css +extra_javascript: + - js/extra.js