From 462fbd2daeaf2f06b22a08f8390fc4caad0454cf Mon Sep 17 00:00:00 2001 From: Jessica Andreani Date: Thu, 2 Nov 2023 10:16:49 +0100 Subject: [PATCH] Update run_colab_template.sh Change default number of recycles to 3, consistent with the options of the runs described in our manuscript. --- scripts/run_colab_template.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/run_colab_template.sh b/scripts/run_colab_template.sh index 70fda2e..4a319aa 100644 --- a/scripts/run_colab_template.sh +++ b/scripts/run_colab_template.sh @@ -11,7 +11,7 @@ FASTA_FILE=$1 # change the name of the a3m file paired/mixed or other export SINGULARITYENV_CUDA_VISIBLE_DEVICES=0 # Set to 0 or 1 to select a specific GPU card or remove the line PARAMETERS='AlphaFold2-multimer-v2' # use PARAMETERS='AlphaFold2-ptm' for running the monomer-based parameters NUMBER_OF_MODELS=5 -NUMBER_OF_RECYCLES=6 +NUMBER_OF_RECYCLES=3 NUMBER_OF_REPEATS=5 # changing the random seed ######### IN GENERAL, BELOW THIS LINE, DO NOT MODIFY UNLESS EXPERT USAGE