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groupby.cu
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groupby.cu
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/*
* Copyright 2016 The George Washington University
* Written by Hang Liu
* Directed by Prof. Howie Huang
*
* https://www.seas.gwu.edu/~howie/
* Contact: [email protected]
*
*
* Please cite the following paper:
*
* Hang Liu, H. Howie Huang and Yang Hu. 2016. iBFS: Concurrent Breadth-First Search on GPUs. Proceedings of the 2016 International Conference on Management of Data. ACM.
*
* This file is part of iBFS.
*
* iBFS is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* iBFS is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with iBFS. If not, see <http://www.gnu.org/licenses/>.
*/
#include "util.h"
#include "graph.h"
#include <iostream>
#include <fstream>
void
graph::
groupby()
{
vertex_t *new_list = new index_t[src_count];
index_t *hubmap=new index_t[vert_count];
index_t *huboff=new index_t[vert_count];
memset(hubmap,0,sizeof(index_t)*vert_count);
memset(huboff,0,sizeof(index_t)*vert_count);
//-divide source into connected to hub
//-not connected to half by "remainoff"
/*counting eligible instances*/
for(index_t i=0;i<src_count;i++)
{
index_t beg=beg_pos[src_list[i]];
index_t end=beg_pos[src_list[i]+1];
/*out-degree <= sdegree*/
if(end-beg>128) continue;
for(index_t j=beg;j<end;j++)
{
/*has hub neighbor*/
if(beg_pos[csr[j]+1]-
beg_pos[csr[j]] > 128)
{
hubmap[csr[j]]++;
break;
}
}
}
/*prefix-sum counted data*/
huboff[0]=0;
for(index_t i=1;i<vert_count;i++)
huboff[i]=huboff[i-1]+hubmap[i-1];
index_t remainoff=huboff[vert_count-1]
+hubmap[vert_count-1];
index_t test=0;
/*formulating group*/
for(index_t i=0;i<src_count;i++)
{
index_t beg=beg_pos[src_list[i]];
index_t end=beg_pos[src_list[i]+1];
//no hub neighbor, put it after "remainoff"
/*non-eligible instance*/
if(end-beg>128)
{
new_list[remainoff]=src_list[i];
remainoff++;
test++;
continue;
}
/*eligible instance*/
bool isEligible=false;
for(index_t j=beg;j<end;j++)
{
//-put it in the corresponding position of
//-prefix sum
/*has hub neighbor*/
if(beg_pos[csr[j]+1]-
beg_pos[csr[j]] > 128)
{
new_list[huboff[csr[j]]]=src_list[i];
huboff[csr[j]]++;
isEligible=true;
break;
}
}
if(!isEligible)
{
new_list[remainoff]=src_list[i];
remainoff++;
test++;
}
}
#ifdef ENABLE_MONITORING
std::ofstream myfile("origin_src.dat");
std::ofstream newfile("new_src.dat");
for(index_t i=0;i<src_count;i++)
{
myfile<<src_list[i]<<"\n";
newfile<<new_list[i]<<"\n";
}
myfile.close();
newfile.close();
index_t remain=src_count;
index_t grouped=0;
std::cout<<"Eligible-BFS(by-src-remain): ";
for(index_t i=0;i<vert_count;i++)
{
if(hubmap[i])
{
std::cout<<hubmap[i]<<" ";
grouped+=hubmap[i];
}
}
remain-=grouped;
std::cout<<remain<<"\n";
std::cout<<"Get test: "<<test<<"\n";
#endif
delete[] src_list;
delete[] hubmap;
delete[] huboff;
src_list=new_list;
return;
}