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icg-nrn-sim

Tool to run voltage clamp protocols in the NEURON Simulator against one or several .mod files.

Usage

Download the .zip file of this repository and save it in your local /tmp/ path. Unzip the file right there and rename the icg-nrn-sim-master directory to icg-nrn-sim.

Next, create a modfiles directory: mkdir -p /tmp/modfiles/

To run a single .mod file which is in /tmp/modfiles/modfile.mod execute the following:

/tmp/icg-nrn-sim/runsingle.pl /tmp/modfiles/modfile.mod /tmp/icg-nrn-sim/kvconfig.in result

To run several .mod files which are in /tmp/modfiles, execute the following:

/tmp/icg-nrn-sim/runbatch.pl /tmp/modfiles /tmp/icg-nrn-sim/kvconfig.in result

Notes

  • The script copies several files to the directory it was called from, so this should be executed from a clean working directory.
  • Currently, the mod file can not be inside the working directory you are calling the script from. It is enough to place it in another directory, e.g. /tmp/modfiles, or in a subdirectory of the working directory.