NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("[",PgR6)
export(PgR6)
export(PgR6M)
export(PgR6MS)
export(load_pangenomeRDS)
export(pagoo)
export(panaroo_2_pagoo)
export(roary_2_pagoo)
import(ggfortify)
import(ggplot2)
importFrom(BiocGenerics,table)
importFrom(Biostrings,BStringSet)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,DNAStringSetList)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(Biostrings,width)
importFrom(Biostrings,xscat)
importFrom(DT,DTOutput)
importFrom(DT,JS)
importFrom(DT,datatable)
importFrom(DT,formatSignif)
importFrom(DT,renderDT)
importFrom(GenomicRanges,"mcols<-")
importFrom(GenomicRanges,mcols)
importFrom(R6,R6Class)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,do.call)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,split)
importFrom(dendextend,seriate_dendrogram)
importFrom(heatmaply,heatmaply)
importFrom(magrittr,`%>%`)
importFrom(plotly,add_lines)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plotly,subplot)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(shiny,HTML)
importFrom(shiny,column)
importFrom(shiny,eventReactive)
importFrom(shiny,fluidRow)
importFrom(shiny,observeEvent)
importFrom(shiny,reactive)
importFrom(shiny,reactiveVal)
importFrom(shiny,renderUI)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,sliderInput)
importFrom(shiny,splitLayout)
importFrom(shiny,tabPanel)
importFrom(shiny,tags)
importFrom(shiny,uiOutput)
importFrom(shinyWidgets,addSpinner)
importFrom(shinyWidgets,pickerInput)
importFrom(shinyWidgets,updatePickerInput)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,infoBox)
importFrom(shinydashboard,infoBoxOutput)
importFrom(shinydashboard,renderInfoBox)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabBox)
importFrom(stats,setNames)
importFrom(utils,installed.packages)
importFrom(utils,read.csv)
importFrom(vegan,vegdist)