Test #2208
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| # 05:00 UTC = 06:00 CET = 07:00 CEST | |
| schedule: | |
| - cron: "0 5 * * *" | |
| # Cancel previous runs that have not completed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| GAMS_VERSION: 29.1.0 | |
| # See description in lint.yml | |
| depth: 100 | |
| jobs: | |
| pytest: | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| - windows-latest | |
| python-version: | |
| - "3.8" # Earliest version supported by message_ix | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" # Latest version supported by message_ix | |
| # Below this comment are newly released or development versions of | |
| # Python. For these versions, binary wheels are not available for some | |
| # dependencies, e.g. llvmlite, numba, numpy, and/or pandas. Compiling | |
| # these on the job runner requires a more elaborate build environment, | |
| # currently out of scope for the message_ix project. | |
| # - "3.13.0-alpha.1" # Development version | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| steps: | |
| - name: Check out message_ix | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| - name: Fetch tags (for setuptools-scm) | |
| run: git fetch --tags --depth=${{ env.depth }} | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: "**/pyproject.toml" | |
| - uses: ts-graphviz/setup-graphviz@v2 | |
| # TEMPORARY Work around ts-graphviz/setup-graphviz#630 | |
| if: ${{ ! startswith(matrix.os, 'macos-') }} | |
| - name: Cache GAMS installer and R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| gams | |
| key: ${{ matrix.os }}-gams${{ env.GAMS_VERSION }} | |
| restore-keys: | | |
| ${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: ${{ env.GAMS_VERSION }} | |
| # license: ${{ secrets.GAMS_LICENSE }} | |
| - name: Install Python package and dependencies | |
| # By default, the below installs ixmp from the main branch. To run against | |
| # other code, e.g. other branches for open PRs), temporarily edit as | |
| # appropriate. DO NOT merge such changes to `main`. | |
| run: | | |
| pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@main" | |
| pip install .[tests] | |
| # TEMPORARY Work around unionai-oss/pandera#1685; | |
| # see https://github.com/khaeru/genno/issues/140 | |
| pip install "numpy < 2" | |
| - name: Run test suite using pytest | |
| env: | |
| # For test_cli.test_dl; see code in message_ix.cli.dl | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| pytest message_ix \ | |
| -m "not nightly and not tutorial" \ | |
| -rA --verbose --color=yes --durations=20 \ | |
| --cov-report=xml \ | |
| --numprocesses=auto --dist=loadgroup | |
| shell: bash | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| tutorials: | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| - windows-latest | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }} tutorials | |
| steps: | |
| - name: Check out message_ix | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache: pip | |
| cache-dependency-path: "**/pyproject.toml" | |
| - name: Set RETICULATE_PYTHON | |
| # Use the environment variable set by the setup-python action, above. | |
| run: echo "RETICULATE_PYTHON=$pythonLocation" >> "$GITHUB_ENV" | |
| shell: bash | |
| - uses: ts-graphviz/setup-graphviz@v2 | |
| # TEMPORARY Work around ts-graphviz/setup-graphviz#630 | |
| if: ${{ ! startswith(matrix.os, 'macos-') }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| with: | |
| windows-path-include-rtools: false | |
| - name: Cache GAMS installer and R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| gams | |
| ${{ env.R_LIBS_USER }} | |
| key: tutorial-${{ matrix.os }}-gams${{ env.GAMS_VERSION }}-R${{ steps.setup-r.outputs.installed-r-version }} | |
| restore-keys: | | |
| tutorial-${{ matrix.os }}-gams${{ env.GAMS_VERSION }}- | |
| tutorial-${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: ${{ env.GAMS_VERSION }} | |
| # license: ${{ secrets.GAMS_LICENSE }} | |
| - name: Install Python package and dependencies | |
| # By default, the below installs ixmp from the main branch. To run against | |
| # other code, e.g. other branches for open PRs), temporarily edit as | |
| # appropriate. DO NOT merge such changes to `main`. | |
| run: | | |
| pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@main" | |
| pip install .[tests] | |
| # TEMPORARY Work around unionai-oss/pandera#1685; | |
| # see https://github.com/khaeru/genno/issues/140 | |
| pip install "numpy < 2" | |
| - name: Install R dependencies and tutorial requirements | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_cran( | |
| c("dplyr", "IRkernel", "reticulate"), | |
| dependencies = TRUE, | |
| # force = TRUE, | |
| ) | |
| IRkernel::installspec() | |
| shell: Rscript {0} | |
| - name: Run test suite using pytest | |
| run: | | |
| pytest message_ix \ | |
| -m "tutorial" \ | |
| -rA --verbose --color=yes --durations=20 \ | |
| --cov-report=xml \ | |
| --numprocesses=auto --dist=loadgroup | |
| shell: bash | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| pre-commit: | |
| name: Code quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: # Same as the "Latest version supported by message_ix", above | |
| python-version: "3.12" | |
| - name: Force recreation of pre-commit virtual environment for mypy | |
| if: github.event_name == 'schedule' # Comment this line to run on a PR | |
| run: gh cache list -L 999 | cut -f2 | grep pre-commit | xargs -I{} gh cache delete "{}" || true | |
| env: { GH_TOKEN: "${{ github.token }}" } | |
| - uses: pre-commit/[email protected] |