You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, I analyzed my data in immunearch for public repertoire analysis, I have generated the figure for immune overlap, and pubrep, I have total 18 samples and I want to analyze public clonotype in each dataset with same v gene same j gene and same CDR3 length or more than 70% similarity in v, j, and cdr3 regions. I analyzed the data with pubrep functions and pubRep(
.data,
.col = "aa+v",
.quant = c("count", "prop"),
.coding = TRUE,
.min.samples = 1,
.max.samples = NA,
.verbose = TRUE
)
i was wondering how can i generate the table of public repertoire amino acid sequences. in the attached figure i see overlap on 59474 but when i open the table then i do not see the similar amino acid sequences. I want to geenrate a table of similar public/shared clonotype sequences for all the subjects in R
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
Hi, I analyzed my data in immunearch for public repertoire analysis, I have generated the figure for immune overlap, and pubrep, I have total 18 samples and I want to analyze public clonotype in each dataset with same v gene same j gene and same CDR3 length or more than 70% similarity in v, j, and cdr3 regions. I analyzed the data with pubrep functions and pubRep(
.data,
.col = "aa+v",
.quant = c("count", "prop"),
.coding = TRUE,
.min.samples = 1,
.max.samples = NA,
.verbose = TRUE
)
i was wondering how can i generate the table of public repertoire amino acid sequences. in the attached figure i see overlap on 59474 but when i open the table then i do not see the similar amino acid sequences. I want to geenrate a table of similar public/shared clonotype sequences for all the subjects in R
Beta Was this translation helpful? Give feedback.
All reactions