diff --git a/book/graphs/other/cig01.qmd b/book/graphs/other/cig01.qmd index 9972adaaeb..9f10d694a4 100644 --- a/book/graphs/other/cig01.qmd +++ b/book/graphs/other/cig01.qmd @@ -154,7 +154,7 @@ The corresponding table is simply obtained using the `rtables` framework: ```{r table6, test = list(table_v6 = "table")} lyt <- basic_table() %>% split_cols_by(var = "ARMCD") %>% - summarize_vars(vars = "AVAL", .stats = c("mean_sd", "median")) + analyze_vars(vars = "AVAL", .stats = c("mean_sd", "median")) table <- build_table(lyt = lyt, df = adlb) table ``` diff --git a/book/graphs/other/mng01.qmd b/book/graphs/other/mng01.qmd index 0ccf7949ed..c9e992930d 100644 --- a/book/graphs/other/mng01.qmd +++ b/book/graphs/other/mng01.qmd @@ -94,7 +94,7 @@ plot plot <- g_lineplot( df = adlb_f, alt_counts_df = adsl_f, - control = control_summarize_vars(conf_level = 0.80), + control = control_analyze_vars(conf_level = 0.80), title = "Plot of Mean and 80% Confidence Limits by Visit", subtitle = "Laboratory Test:" ) diff --git a/book/tables/adverse-events/aet04_pi.qmd b/book/tables/adverse-events/aet04_pi.qmd index 8440a8ab34..f778233670 100644 --- a/book/tables/adverse-events/aet04_pi.qmd +++ b/book/tables/adverse-events/aet04_pi.qmd @@ -52,7 +52,7 @@ full_table_aet04_pi <- function(adsl, adae_max) { .stats = "unique", .labels = "Total number of patients with at least one adverse event" ) %>% - summarize_vars( + analyze_vars( "AEDECOD", na.rm = FALSE, denom = "N_col", @@ -241,7 +241,7 @@ full_table <- basic_table() %>% .stats = "unique", .labels = "Total number of patients with at least one adverse event" ) %>% - summarize_vars( + analyze_vars( "AEDECOD", na.rm = FALSE, denom = "N_col", @@ -298,7 +298,7 @@ full_table <- basic_table() %>% .stats = "unique", .labels = "Total number of patients with at least one adverse event" ) %>% - summarize_vars( + analyze_vars( "AEDECOD", na.rm = FALSE, denom = "N_col", @@ -345,7 +345,7 @@ col_counts <- rep(table(adsl$ACTARM), each = length(grade_groups)) full_table <- basic_table() %>% split_cols_by("ACTARM") %>% split_cols_by_groups("MAXAETOXGR", groups = grade_groups) %>% - summarize_vars( + analyze_vars( "AEDECOD", na.rm = FALSE, denom = "N_col", diff --git a/book/tables/efficacy/dort01.qmd b/book/tables/efficacy/dort01.qmd index 65dc230f2b..c255568d12 100644 --- a/book/tables/efficacy/dort01.qmd +++ b/book/tables/efficacy/dort01.qmd @@ -52,7 +52,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = "Responders", .stats = "count" ) %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders with subsequent event (%)"), @@ -68,7 +68,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 2L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders without subsequent event (%)"), @@ -105,7 +105,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = "Responders", .stats = "count" ) %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders with subsequent event (%)"), @@ -121,7 +121,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 2L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders without subsequent event (%)"), @@ -160,7 +160,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = "Responders", .stats = "count" ) %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders with subsequent event (%)"), @@ -176,7 +176,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 2L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders without subsequent event (%)"), @@ -215,7 +215,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = "Responders", .stats = "count" ) %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders with subsequent event (%)"), @@ -231,7 +231,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 2L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Responders without subsequent event (%)"), diff --git a/book/tables/efficacy/mmrmt01.qmd b/book/tables/efficacy/mmrmt01.qmd index c14cb10002..17754c628d 100644 --- a/book/tables/efficacy/mmrmt01.qmd +++ b/book/tables/efficacy/mmrmt01.qmd @@ -128,7 +128,7 @@ baseline_dat <- adqs %>% b <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARMCD") %>% split_rows_by("AVISIT") %>% - summarize_vars("AVAL") %>% + analyze_vars("AVAL") %>% append_topleft(" Statistics") %>% build_table(baseline_dat, alt_counts_df = adsl_sub) diff --git a/book/tables/efficacy/ttet01.qmd b/book/tables/efficacy/ttet01.qmd index 4b8a29e5df..6ad7d13fd6 100644 --- a/book/tables/efficacy/ttet01.qmd +++ b/book/tables/efficacy/ttet01.qmd @@ -48,7 +48,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by( var = "ARM", ref_group = "A: Drug X" ) %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") @@ -62,7 +62,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 1L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), @@ -102,12 +102,12 @@ result ```{r variant2, test = list(result_v2 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "A: Drug X") %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") ) %>% - summarize_vars( + analyze_vars( "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), @@ -144,7 +144,7 @@ result ```{r variant3, test = list(result_v3 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "A: Drug X") %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") @@ -158,7 +158,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 1L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), @@ -212,7 +212,7 @@ result ```{r variant4, test = list(result_v4 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "A: Drug X") %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") @@ -226,7 +226,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 1L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), @@ -271,7 +271,7 @@ result ```{r variant5, test = list(result_v5 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "A: Drug X") %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") @@ -285,7 +285,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 1L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), @@ -324,7 +324,7 @@ result ```{r variant6, test = list(result_v6 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "A: Drug X") %>% - summarize_vars( + analyze_vars( vars = "is_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients with event (%)") @@ -338,7 +338,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% indent_mod = 1L, ) %>% analyze("EVNTDESC") %>% - summarize_vars( + analyze_vars( vars = "is_not_event", .stats = "count_fraction", .labels = c(count_fraction = "Patients without event (%)"), diff --git a/book/tables/lab-results/lbt02.qmd b/book/tables/lab-results/lbt02.qmd index 5377c976dd..12db94f8f5 100644 --- a/book/tables/lab-results/lbt02.qmd +++ b/book/tables/lab-results/lbt02.qmd @@ -49,7 +49,7 @@ l <- basic_table(show_colcounts = TRUE) %>% label_pos = "topleft", split_label = obj_label(adlb$AVISIT) ) %>% - summarize_vars(vars = "AVAL") + analyze_vars(vars = "AVAL") result <- build_table(l, df = adlb, diff --git a/book/tables/other/disclosurest01.qmd b/book/tables/other/disclosurest01.qmd index aaab140fd6..aa095a6804 100644 --- a/book/tables/other/disclosurest01.qmd +++ b/book/tables/other/disclosurest01.qmd @@ -113,7 +113,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% split_fun = split_fun ) %>% summarize_row_groups(label_fstr = "Discontinued Study") %>% - summarize_vars( + analyze_vars( "STDDRS", .stats = "count_fraction" ) %>% @@ -166,7 +166,7 @@ var_labels <- c("Age (yr)", "Age group", "Sex", "Race", "Ethnicity") lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ARM") %>% add_overall_col("All Patients") %>% - summarize_vars( + analyze_vars( vars = vars, var_labels = var_labels ) @@ -203,7 +203,7 @@ var_labels(adsl) <- c(adsl_labels) lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM") %>% add_overall_col(label = "All Patients") %>% - summarize_vars("COUNTRY") %>% + analyze_vars("COUNTRY") %>% append_varlabels(adsl, "COUNTRY") result <- build_table(lyt, adsl) diff --git a/book/tables/other/ratet01.qmd b/book/tables/other/ratet01.qmd index 74c8407f4e..5178754a52 100644 --- a/book/tables/other/ratet01.qmd +++ b/book/tables/other/ratet01.qmd @@ -33,7 +33,7 @@ anl <- df_explicit_na(anl) ```{r variant1, test = list(result_v1 = "result")} lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ARM", ref_group = "B: Placebo") %>% - summarize_vars( + analyze_vars( "AVAL_f", var_labels = "Number of exacerbations per patient", .stats = c("count_fraction"), diff --git a/book/tables/pharmacokinetic/adat02.qmd b/book/tables/pharmacokinetic/adat02.qmd index d578797766..630e8e817e 100644 --- a/book/tables/pharmacokinetic/adat02.qmd +++ b/book/tables/pharmacokinetic/adat02.qmd @@ -93,13 +93,13 @@ lyt_adab_ti <- basic_table(show_colcounts = TRUE) %>% var_labels = "Treatment-induced ADA patients with", show_labels = "visible" ) %>% - summarize_vars( + analyze_vars( "Time to onset of ADA", .stats = "median", nested = FALSE, .labels = c(median = "Median time to onset of ADA (weeks)") ) %>% - summarize_vars( + analyze_vars( "Antibody titer units", .stats = "range", nested = FALSE, diff --git a/book/tables/pharmacokinetic/pkpt02.qmd b/book/tables/pharmacokinetic/pkpt02.qmd index cfb7b2dee4..f6133c7a9b 100644 --- a/book/tables/pharmacokinetic/pkpt02.qmd +++ b/book/tables/pharmacokinetic/pkpt02.qmd @@ -37,7 +37,7 @@ lyt <- basic_table() %>% label_pos = "topleft", split_label = "PK Parameter" ) %>% - tern::summarize_vars( + tern::analyze_vars( vars = "AVAL", .stats = c("n", "mean_sd", "cv", "geom_mean", "geom_cv", "median", "range"), .formats = c( diff --git a/book/tables/pharmacokinetic/pkpt04.qmd b/book/tables/pharmacokinetic/pkpt04.qmd index d1dc5f6d5d..3784d605f2 100644 --- a/book/tables/pharmacokinetic/pkpt04.qmd +++ b/book/tables/pharmacokinetic/pkpt04.qmd @@ -37,7 +37,7 @@ lyt <- basic_table() %>% label_pos = "topleft", split_label = "PK Parameter" ) %>% - tern::summarize_vars( + tern::analyze_vars( vars = "AVAL", .stats = c("n", "mean_sd", "cv", "geom_mean", "geom_cv", "median", "range"), .formats = c( diff --git a/book/tables/pharmacokinetic/pkpt06.qmd b/book/tables/pharmacokinetic/pkpt06.qmd index c72fc0dc3f..e5be398acb 100644 --- a/book/tables/pharmacokinetic/pkpt06.qmd +++ b/book/tables/pharmacokinetic/pkpt06.qmd @@ -38,7 +38,7 @@ lyt <- basic_table() %>% label_pos = "topleft", split_label = "PK Parameter" ) %>% - tern::summarize_vars( + tern::analyze_vars( vars = "AVAL", .stats = c("n", "mean_sd", "cv", "geom_mean", "geom_cv", "median", "range"), .formats = c( diff --git a/book/tables/pharmacokinetic/pkpt08.qmd b/book/tables/pharmacokinetic/pkpt08.qmd index fa85e14e00..cdc9b07478 100644 --- a/book/tables/pharmacokinetic/pkpt08.qmd +++ b/book/tables/pharmacokinetic/pkpt08.qmd @@ -38,7 +38,7 @@ lyt <- basic_table() %>% label_pos = "topleft", split_label = "Treatment Arm" ) %>% - summarize_vars( + analyze_vars( vars = "AVAL", .stats = c( "n", "mean", "sd", "cv", diff --git a/book/tables/safety/dmt01.qmd b/book/tables/safety/dmt01.qmd index f2c4cf2859..d44696422e 100644 --- a/book/tables/safety/dmt01.qmd +++ b/book/tables/safety/dmt01.qmd @@ -101,7 +101,7 @@ var_labels <- c( result <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ACTARM") %>% add_overall_col("All Patients") %>% - summarize_vars( + analyze_vars( vars = vars, var_labels = var_labels ) %>% @@ -125,7 +125,7 @@ var_labels <- c( result <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ACTARM") %>% - summarize_vars( + analyze_vars( vars = vars, var_labels = var_labels ) %>% @@ -141,14 +141,14 @@ split_fun <- drop_split_levels result <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ACTARM") %>% - summarize_vars( + analyze_vars( vars = c("AGE", "SEX", "RACE"), var_labels = c("Age", "Sex", "Race") ) %>% split_rows_by("STRATA1", split_fun = split_fun ) %>% - summarize_vars("BMRKR1") %>% + analyze_vars("BMRKR1") %>% build_table(adsl) result @@ -159,7 +159,7 @@ result ```{r variant4, test = list(result_v4 = "result")} result <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ACTARM") %>% - summarize_vars( + analyze_vars( vars = c("AGE", "SEX", "RACE", "DBP", "SBP"), var_labels = c( "Age (yr)", @@ -179,7 +179,7 @@ result ```{r variant5, test = list(result_v5 = "result")} result <- basic_table(show_colcounts = TRUE) %>% split_cols_by(var = "ACTARM") %>% - summarize_vars( + analyze_vars( vars = c("AGE", "SEX", "RACE", "BBMISI"), var_labels = c( "Age (yr)", diff --git a/book/tables/safety/dst01.qmd b/book/tables/safety/dst01.qmd index cde31a8a83..3a5beb6b77 100644 --- a/book/tables/safety/dst01.qmd +++ b/book/tables/safety/dst01.qmd @@ -54,7 +54,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .stats = "count_fraction", show_labels = "hidden" ) %>% - summarize_vars( + analyze_vars( "DCSREAS", .stats = "count_fraction", denom = "N_col", @@ -80,7 +80,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% show_labels = "hidden" ) %>% split_rows_by("DCSREASGP", indent_mod = 1L) %>% - summarize_vars( + analyze_vars( "DCSREAS", .stats = "count_fraction", denom = "N_col", diff --git a/book/tables/safety/dtht01.qmd b/book/tables/safety/dtht01.qmd index 30cd1f84e5..ef55337fa2 100644 --- a/book/tables/safety/dtht01.qmd +++ b/book/tables/safety/dtht01.qmd @@ -37,7 +37,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = c(count_fraction = "Total number of deaths"), .formats = c(count_fraction = "xx (xx.x%)") ) %>% - summarize_vars(vars = c("DTHCAT"), var_labels = c("Primary Cause of Death")) + analyze_vars(vars = c("DTHCAT"), var_labels = c("Primary Cause of Death")) result <- build_table(lyt, df = adsl) result @@ -54,15 +54,15 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = c(count_fraction = "Total number of deaths"), .formats = c(count_fraction = "xx (xx.x%)") ) %>% - summarize_vars(vars = c("DTHCAT"), var_labels = c("Primary Cause of Death")) %>% + analyze_vars(vars = c("DTHCAT"), var_labels = c("Primary Cause of Death")) %>% split_rows_by("DTHCAT", split_fun = keep_split_levels("OTHER"), child_labels = "hidden") %>% - summarize_vars( + analyze_vars( "DTHCAUS", .stats = "count_fraction", .indent_mods = c("count_fraction" = 2L), show_labels = "hidden" ) %>% - summarize_vars( + analyze_vars( vars = "LDDTHGR1", nested = FALSE, var_labels = "Days from last drug administration", @@ -74,7 +74,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% split_label = "Primary cause by days from last study drug administration", label_pos = "visible" ) %>% - summarize_vars("DTHCAT") + analyze_vars("DTHCAT") result <- build_table(lyt, df = adsl) %>% prune_table() @@ -94,7 +94,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = c(count_fraction = "Total number of deaths"), .formats = c(count_fraction = "xx (xx.x%)") ) %>% - summarize_vars( + analyze_vars( vars = c("DTHCAT"), var_labels = c("Primary Cause of Death"), table_names = "primary_cause" @@ -147,7 +147,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .labels = c(count_fraction = "Total number of deaths"), .formats = c(count_fraction = "xx (xx.x%)") ) %>% - summarize_vars( + analyze_vars( vars = c("DTHCAT"), var_labels = c("Primary Cause of Death"), table_names = "primary_cause" @@ -169,7 +169,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% .indent_mods = c(count_fraction = 2L), table_names = "all_other_causes" ) %>% - summarize_vars( + analyze_vars( "DTHCAUS_other", .stats = "count_fraction", .indent_mods = c("count_fraction" = 3L), diff --git a/book/tables/safety/egt03.qmd b/book/tables/safety/egt03.qmd index 587e7b7e83..6d335eb12e 100644 --- a/book/tables/safety/egt03.qmd +++ b/book/tables/safety/egt03.qmd @@ -80,7 +80,7 @@ lyt <- basic_table() %>% split_cols_by("ANRIND") %>% split_rows_by("ARMCD", split_fun = split_fun, label_pos = "topleft", split_label = obj_label(adeg_f_pbmin$ARMCD)) %>% add_rowcounts() %>% - summarize_vars("BNRIND", denom = "N_row", .stats = "count_fraction") %>% + analyze_vars("BNRIND", denom = "N_row", .stats = "count_fraction") %>% append_varlabels(adeg_f_pbmin, c("BNRIND"), indent = 1L) result <- build_table( @@ -127,7 +127,7 @@ lyt <- basic_table() %>% split_cols_by("ANRIND") %>% split_rows_by("ARMCD", split_fun = split_fun, label_pos = "topleft", split_label = obj_label(adeg_f_pbmax$ARMCD)) %>% add_rowcounts() %>% - summarize_vars("BNRIND", denom = "N_row", .stats = "count_fraction") %>% + analyze_vars("BNRIND", denom = "N_row", .stats = "count_fraction") %>% append_varlabels(adeg_f_pbmax, c("BNRIND"), indent = 1L) result <- build_table( diff --git a/book/tables/safety/egt04.qmd b/book/tables/safety/egt04.qmd index e317ab3cbf..fb960b9b2a 100644 --- a/book/tables/safety/egt04.qmd +++ b/book/tables/safety/egt04.qmd @@ -73,7 +73,7 @@ lyt <- basic_table() %>% split_cols_by("AVALC") %>% split_rows_by("ARM", split_fun = split_fun, label_pos = "topleft", split_label = obj_label(adeg_f$ARM)) %>% add_rowcounts() %>% - summarize_vars( + analyze_vars( "BASEC", denom = "N_row", .stats = "count_fraction", diff --git a/book/tables/safety/egt05_qtcat.qmd b/book/tables/safety/egt05_qtcat.qmd index fe2d2bf3eb..db249bacc5 100644 --- a/book/tables/safety/egt05_qtcat.qmd +++ b/book/tables/safety/egt05_qtcat.qmd @@ -91,7 +91,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% split_fun = split_fun, label_pos = "topleft" ) %>% - summarize_vars( + analyze_vars( vars = c("AVALCAT1", "CHGCAT1"), var_labels = c("Value at Visit", "Change from Baseline") ) %>% diff --git a/book/tables/safety/enrollment01.qmd b/book/tables/safety/enrollment01.qmd index 5c74110dbc..e1f3b81cc0 100644 --- a/book/tables/safety/enrollment01.qmd +++ b/book/tables/safety/enrollment01.qmd @@ -124,7 +124,7 @@ result ## `teal` App Note that for this module application, only the variables passed into `by_vars` are used when `row_groups` is selected. -Variables passed into `summarize_vars` are additionally used when `row_groups` is deselected. +Variables passed into `analyze_vars` are additionally used when `row_groups` is deselected. ```{r teal, message=FALSE, opts.label='skip_if_testing'} #| screenshot.opts = list(delay = 8) diff --git a/book/tables/safety/ext01.qmd b/book/tables/safety/ext01.qmd index ec97115ed3..c78efad124 100644 --- a/book/tables/safety/ext01.qmd +++ b/book/tables/safety/ext01.qmd @@ -89,7 +89,7 @@ lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ACTARM") %>% split_rows_by("PARCAT2", split_label = "\nParameter Category (Drug A/Drug B)", label_pos = "topleft") %>% split_rows_by("PARAM", split_fun = split_fun) %>% - summarize_vars(vars = "AVAL") + analyze_vars(vars = "AVAL") result <- build_table(lyt = lyt, df = adex, alt_counts_df = adsl) @@ -133,7 +133,7 @@ anl <- adex %>% lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ACTARM") %>% split_rows_by("PARCAT2", split_label = "\nParameter Category (Drug A/Drug B)", label_pos = "topleft") %>% - summarize_vars( + analyze_vars( vars = c("TDURD", "TDURDC", "TDOSE", "TNDOSE"), var_labels = var_labels(anl)[c("TDURD", "TDURDC", "TDOSE", "TNDOSE")] ) @@ -180,7 +180,7 @@ anl <- adex %>% lyt <- basic_table(show_colcounts = TRUE) %>% split_cols_by("ACTARM") %>% split_rows_by("PARCAT2", split_label = "\nParameter Category (Drug A/Drug B)", label_pos = "topleft") %>% - summarize_vars( + analyze_vars( vars = c("TDURD", "TDURDC", "TDOSE", "TNDOSE"), var_labels = var_labels(anl)[c("TDURD", "TDURDC", "TDOSE", "TNDOSE")] ) %>%