diff --git a/README.md b/README.md index 72843cd..535b531 100644 --- a/README.md +++ b/README.md @@ -43,6 +43,16 @@ $ pfastq-dump --threads 8 --stdout /path/to/**/*sra > data.fastq Mind the disk usage as well as the original implementation warns, this script requires double of decompressed fastq file size. +## Docker container + +Available on [Quay.io](https://quay.io/repository/inutano/sra-toolkit) + +``` +$ ls +mydata.sra +$ docker run --rm -v "$(pwd)":/data -w /data quay.io/inutano/sra-toolkit:v2.9.2 pfastq-dump --threads 8 /data/mydata.sra +``` + ## Copyright Copyright (c) 2017 Tazro Inutano Ohta. See LICENSE.txt for further details.