Releases: iquasere/UPIMAPI
Fixed unmapped IDs
- when writting to working directory, it failed
- also, now can handle empty input file
UPIMAPI now reads input through the command line!
Added the option to read from input the IDs to be mapped, might be nice to open that possibility.
Also fixed some bugs related to EXCEL/TSV reading and writing.
Now install script also mentions the EXCEL plugins for pandas, required for EXCEL I/O.
Improvements for integration into Conda
Changed header of main script
Added version info
Several improvements for integration in pipelines
UPIMAPI now:
- properly handles BLAST input
- accepts '' as input for columns and databases
- handles tr|XXX|XXX IDs if specified with the --full-id parameter
UPIMAPI 1.0
A tool for mapping UniProt IDs through the API made available by the good friends at EBI.
It allows to obtain information regarding proteins' names & taxonomy, sequences, function, interactions, expression, gene ontology, pathology & biotech, subcellular location, PTM / processsing, structure, publications,
dates of publications, family & domains, taxonomic lineage, taxonomic identifier, and cross-references to 169 databases!
UPIMAPI can get all this information with a simple input of UniProt IDs or a BLAST file, and export results to TSV and EXCEL format!
UPIMAPI can also instead obtain the sequences of proteins corresponding to the IDs, and export results in FASTA format.