Skip to content

Releases: iquasere/UPIMAPI

Fixed unmapped IDs

17 Aug 10:48
Compare
Choose a tag to compare
  • when writting to working directory, it failed
  • also, now can handle empty input file

UPIMAPI now reads input through the command line!

19 May 15:00
Compare
Choose a tag to compare

Added the option to read from input the IDs to be mapped, might be nice to open that possibility.
Also fixed some bugs related to EXCEL/TSV reading and writing.
Now install script also mentions the EXCEL plugins for pandas, required for EXCEL I/O.

Improvements for integration into Conda

15 May 23:44
Compare
Choose a tag to compare

Changed header of main script
Added version info

Several improvements for integration in pipelines

29 Mar 14:40
Compare
Choose a tag to compare

UPIMAPI now:

  • properly handles BLAST input
  • accepts '' as input for columns and databases
  • handles tr|XXX|XXX IDs if specified with the --full-id parameter

UPIMAPI 1.0

19 Mar 10:58
Compare
Choose a tag to compare

A tool for mapping UniProt IDs through the API made available by the good friends at EBI.
It allows to obtain information regarding proteins' names & taxonomy, sequences, function, interactions, expression, gene ontology, pathology & biotech, subcellular location, PTM / processsing, structure, publications,
dates of publications, family & domains, taxonomic lineage, taxonomic identifier, and cross-references to 169 databases!
UPIMAPI can get all this information with a simple input of UniProt IDs or a BLAST file, and export results to TSV and EXCEL format!
UPIMAPI can also instead obtain the sequences of proteins corresponding to the IDs, and export results in FASTA format.