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  1. SciML/Catalyst.jl SciML/Catalyst.jl Public

    Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

    Julia 464 78

  2. SciML/JumpProcesses.jl SciML/JumpProcesses.jl Public

    Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

    Julia 141 35

  3. SciML/ReactionNetworkImporters.jl SciML/ReactionNetworkImporters.jl Public

    Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

    Julia 26 9

  4. ibmethod2d ibmethod2d Public

    MATLAB 2