diff --git a/README.Rmd b/README.Rmd
index c2598a6..60c4b39 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -17,7 +17,6 @@ version <- as.character(packageVersion("isoreader"))
# isoreader 
[](https://cran.r-project.org/package=isoreader)
-[](https://github.com/isoverse/isoreader/commits)
[](https://isoreader.isoverse.org/)
[](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
[](https://mybinder.org/v2/gh/isoverse/isoreader/binder?urlpath=rstudio)
diff --git a/README.md b/README.md
index b2fcf3b..01570d6 100644
--- a/README.md
+++ b/README.md
@@ -4,8 +4,6 @@
# isoreader
[](https://cran.r-project.org/package=isoreader)
-[](https://github.com/isoverse/isoreader/commits)
-[](https://doi.org/10.21105/joss.02878)
[](https://isoreader.isoverse.org/)
[](https://github.com/isoverse/isoreader/actions?workflow=R-CMD-check)
@@ -78,8 +76,8 @@ devtools::install_github("isoverse/isoreader")
Troubleshooting note: depending on your workspace and operating system,
you may have to re-start your R session or manually install some
dependencies. For example, the `digest` package sometimes causes trouble
-- re-install with `remove.packages("digest");
-install.packages("digest")`.
+- re-install with
+`remove.packages("digest"); install.packages("digest")`.
## Show me some code
@@ -100,17 +98,17 @@ iso_files <- iso_read_scan(data_folder)
#> Info: reading file 'full_scan_example.scn' with '.scn' reader...
#> Info: reading file 'peak_shape_scan_example.scn' with '.scn' reader...
#> Info: reading file 'time_scan_example.scn' with '.scn' reader...
-#> Info: finished reading 4 files in 0.99 secs
+#> Info: finished reading 4 files in 0.82 secs
iso_files
#> Data from 4 scan iso files:
-#> # A tibble: 4 x 5
-#> file_id raw_data file_info method_info file_path
-#>
-#> 1 background_sca… 525 measurements, 7 io… 8 entries resistors background_scan…
-#> 2 full_scan_exam… 799 measurements, 3 ch… 8 entries resistors full_scan_examp…
-#> 3 peak_shape_sca… 220 measurements, 3 io… 8 entries resistors peak_shape_scan…
-#> 4 time_scan_exam… 5532 measurements, 2 i… 8 entries resistors time_scan_examp…
+#> # A tibble: 4 × 5
+#> file_id raw_data file_info method_info file_path
+#>
+#> 1 background_scan_example.scn 525 measuremen… 8 entries resistors background_…
+#> 2 full_scan_example.scn 799 measuremen… 8 entries resistors full_scan_e…
+#> 3 peak_shape_scan_example.scn 220 measuremen… 8 entries resistors peak_shape_…
+#> 4 time_scan_example.scn 5532 measureme… 8 entries resistors time_scan_e…
```
## Supported File Types
@@ -118,7 +116,7 @@ iso_files
Currently supported file types:
| type | extension | software | description |
-| :-------------- | :-------- | :-------- | :---------------------------------- |
+|:----------------|:----------|:----------|:------------------------------------|
| continuous flow | .cf | Isodat | Continuous Flow file format (older) |
| continuous flow | .cf.rds | isoreader | R Data Storage |
| continuous flow | .dxf | Isodat | Continuous Flow file format (newer) |
@@ -132,21 +130,21 @@ Currently supported file types:
## Documentation
- - for a quick introduction, check out the aforementioned [**Quick
+- for a quick introduction, check out the aforementioned [**Quick
Start
Vignette**](https://isoreader.isoverse.org/articles/quick_start.html)
- - for a full reference of all available functions, see the **[Function
+- for a full reference of all available functions, see the **[Function
Reference](https://isoreader.isoverse.org/reference/)**
- - for function help within RStudio, simply start typing `?iso_` in the
+- for function help within RStudio, simply start typing `?iso_` in the
console and a list of available function will appear (all functions
share the `iso_` prefix)
- - for a detailed example of how to work with continuous flow data
+- for a detailed example of how to work with continuous flow data
files, see the vignette on **[Continuous
Flow](https://isoreader.isoverse.org/articles/continuous_flow.html)**
- - for a detailed example of how to work with dual inlet data files,
+- for a detailed example of how to work with dual inlet data files,
see the vignette on **[Dual
Inlet](https://isoreader.isoverse.org/articles/dual_inlet.html)**
- - for a detailed example of how to work with scan data files, see the
+- for a detailed example of how to work with scan data files, see the
vignette on
**[Scans](https://isoreader.isoverse.org/articles/scan.html)**
@@ -168,7 +166,7 @@ please take a look at the development section below.
## Development
-If you are interested in helping with development, that’s fantastic\!
+If you are interested in helping with development, that’s fantastic!
Please fork the repository and branch off from the [dev
branch](https://github.com/isoverse/isoreader/tree/dev) since it
contains the most up-to-date development version of
@@ -176,10 +174,10 @@ contains the most up-to-date development version of
[`testthat` tests](https://r-pkgs.org/tests.html) for your work (stored
in the tests/testthat directory). All tests can be run automatically and
continuously during development to make it easier to spot any code
-problems on the go. The easiest way to run them is by running `make
-auto_test` in the [isoreader](https://isoreader.isoverse.org/) directory
-from command line (it will test everything automatically in a completely
-separate R session).
+problems on the go. The easiest way to run them is by running
+`make auto_test` in the [isoreader](https://isoreader.isoverse.org/)
+directory from command line (it will test everything automatically in a
+completely separate R session).
## Open Source