introduce ctest

.github/workflows/main.yml

@@ -8,10 +8,9 @@ jobs:
       matrix:
         # os: ['ubuntu-22.04']
         python-version: ['3.9', '3.12']
-        sample: [mapper, minsearch, exchange, exchange_mesh, pamc, bayes, transform]
       fail-fast: false
 
-    name: ${{ matrix.sample }} with Python ${{ matrix.python-version }}
+    name: Run tests with Python ${{ matrix.python-version }}
     runs-on: 'ubuntu-22.04'
     # runs-on: ${{ matrix.os }}
     timeout-minutes: 10
@@ -38,7 +37,7 @@ jobs:
           python -m pip install numpy scipy tomli mpi4py
           python -m pip install physbo
 
-      - name: ${{ matrix.sample }}
+      - name: run
         run: |
-          cd ${GITHUB_WORKSPACE}/tests/${{ matrix.sample }}
-          sh ./do.sh
+          mkdir build && cd build && cmake ..
+          ctest -V

CMakeLists.txt

@@ -0,0 +1,4 @@
+cmake_minimum_required(VERSION 3.5)
+project(ODAT-SE)
+enable_testing()
+add_subdirectory(tests)

tests/CMakeLists.txt

@@ -0,0 +1,65 @@
+add_test(
+  NAME bayes
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/bayes
+  )
+
+add_test(
+  NAME exchange
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/exchange
+  )
+
+add_test(
+  NAME exchange_mesh
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/exchange_mesh
+  )
+
+add_test(
+  NAME mapper
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/mapper
+  )
+
+add_test(
+  NAME minsearch
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/minsearch
+  )
+
+add_test(
+  NAME pamc
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/pamc
+  )
+
+add_test(
+  NAME transform
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/transform
+  )
+
+add_test(
+  NAME bayes_continue
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/bayes_continue
+  )
+
+add_test(
+  NAME exchange_continue
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/exchange_continue
+  )
+
+add_test(
+  NAME mapper_resume
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/mapper_resume
+  )
+
+add_test(
+  NAME pamc_continue
+  COMMAND sh do.sh
+  WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/tests/pamc_continue
+  )

tests/bayes/do.sh

@@ -1,5 +1,7 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Remove the output directory if it exists
 rm -rf output
 

tests/bayes_continue/do.sh

@@ -1,7 +1,9 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Command to run the main Python script
-CMD="python3 -u ../../src/odatse_main.py"
+CMD="python3 ../../src/odatse_main.py"
 
 # Remove the output1 directory if it exists
 rm -rf output1

tests/exchange/do.sh

@@ -1,10 +1,13 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+export OMPI_MCA_rmaps_base_oversubscribe=1
+
 # Remove the output directory if it exists
 rm -rf output
 
 # Run the Python script using mpiexec with 4 processes and measure the time taken
-time mpiexec --oversubscribe -np 4 python3 ../../src/odatse_main.py input.toml
+time mpiexec -np 4 python3 ../../src/odatse_main.py input.toml
 
 # Define the result file path
 resfile=output/best_result.txt
@@ -23,4 +26,4 @@ else
   # If the files differ, print TEST FAILED with the result file path
   echo TEST FAILED: $resfile and ref.txt differ
   false
-fi
+fi

tests/exchange_continue/do.sh

@@ -1,7 +1,10 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+export OMPI_MCA_rmaps_base_oversubscribe=1
+
 # Command to run the Python script with MPI
-CMD="mpiexec --oversubscribe -np 4 python3 -u ../../src/odatse_main.py"
+CMD="mpiexec -np 4 python3 ../../src/odatse_main.py"
 
 # Remove the output1 directory if it exists
 rm -rf output1
@@ -35,4 +38,4 @@ if [ $res -eq 0 ]; then
 else
   echo TEST FAILED: $resfile and $reffile differ
   false
-fi
+fi

tests/exchange_mesh/do.sh

@@ -1,5 +1,7 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Remove the output directory if it exists
 rm -rf output
 
@@ -32,4 +34,4 @@ else
   # Output TEST FAILED if files differ
   echo TEST FAILED: $resfile and ref.txt differ
   false
-fi
+fi

tests/mapper/do.sh

@@ -1,10 +1,13 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+export OMPI_MCA_rmaps_base_oversubscribe=1
+
 # Remove the output directory if it exists
 rm -rf output
 
 # Run the Python script with MPI, using 2 processes
-time mpiexec --oversubscribe -np 2 python3 ../../src/odatse_main.py input.toml
+time mpiexec -np 2 python3 ../../src/odatse_main.py input.toml
 
 # Define the result file path
 resfile=output/ColorMap.txt
@@ -21,4 +24,4 @@ if [ $res -eq 0 ]; then
 else
   echo TEST FAILED: $resfile and ref.txt differ
   false
-fi
+fi

tests/mapper_resume/do.sh

@@ -1,9 +1,11 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Command to run the main Python script
-CMD="python3 -u ../../src/odatse_main.py"
+CMD="python3 ../../src/odatse_main.py"
 # Uncomment the following line to run with MPI
-# CMD="mpiexec -np 2 python3 -u ../../src/odatse_main.py"
+# CMD="mpiexec -np 2 python3 ../../src/odatse_main.py"
 
 # Remove the output1 directory if it exists
 rm -rf output1
@@ -40,4 +42,4 @@ if [ $res -eq 0 ]; then
 else
   echo TEST FAILED: $resfile and $reffile differ
   false
-fi
+fi

tests/minsearch/do.sh

@@ -1,5 +1,7 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Remove the output directory if it exists
 rm -rf output
 
@@ -27,4 +29,4 @@ else
   # If the files differ, print TEST FAILED with the file names
   echo TEST FAILED: $resfile and ref.txt differ
   false
-fi
+fi

tests/pamc/do.sh

@@ -1,10 +1,13 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+export OMPI_MCA_rmaps_base_oversubscribe=1
+
 # Remove the output directory if it exists
 rm -rf output
 
 # Run the Python script using MPI with 2 processes
-time mpiexec --oversubscribe -np 2 python3 -m mpi4py ../../src/odatse_main.py input.toml
+time mpiexec -np 2 python3 -m mpi4py ../../src/odatse_main.py input.toml
 
 # Define the result file path
 resfile=output/best_result.txt
@@ -21,4 +24,4 @@ if [ $res -eq 0 ]; then
 else
   echo TEST FAILED: $resfile and ref.txt differ
   false
-fi
+fi

tests/pamc_continue/do.sh

@@ -1,22 +1,25 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+export OMPI_MCA_rmaps_base_oversubscribe=1
+
 # Command to run the Python script with MPI
-CMD="mpiexec --oversubscribe -np 2 python3 -u ../../src/odatse_main.py"
+CMD="mpiexec -np 2 python3 ../../src/odatse_main.py"
 
 # Remove the output1 directory if it exists
 rm -rf output1
 
-# Run the command with input1a.toml and log the output
-time $CMD input1a.toml 2>&1 | tee run.log.1a
+# Run the command with input1a.toml
+time $CMD input1a.toml
 
-# Run the command with input1b.toml in continuation mode and log the output
-time $CMD --cont input1b.toml 2>&1 | tee run.log.1b
+# Run the command with input1b.toml in continuation mode
+time $CMD --cont input1b.toml
 
 # Remove the output2 directory if it exists
 rm -rf output2
 
-# Run the command with input2.toml and log the output
-time $CMD input2.toml 2>&1 | tee run.log.2
+# Run the command with input2.toml
+time $CMD input2.toml
 
 # Define the result and reference files for comparison
 # resfile=output1/best_result.txt
@@ -40,4 +43,4 @@ if [ $res -eq 0 ]; then
 else
   echo TEST FAILED: $resfile and $reffile differ
   false
-fi
+fi

tests/transform/do.sh

@@ -1,5 +1,7 @@
 #!/bin/sh
 
+export PYTHONUNBUFFERED=1
+
 # Remove the existing ColorMap.txt file from the output_transform directory
 rm -f output_transform/ColorMap.txt
 
@@ -25,4 +27,4 @@ if [ $res = 0 ]; then
 else
   echo "TEST FAILED (diff = $res)"
   false
-fi
+fi