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Removing ms-nyu images which are in sct-testing-large #44

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plbenveniste opened this issue Dec 17, 2024 · 1 comment
Open

Removing ms-nyu images which are in sct-testing-large #44

plbenveniste opened this issue Dec 17, 2024 · 1 comment

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@plbenveniste
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I realised while doing the QC of the MS datasets that t most subjects in ms-nyu were in sct-testing-large.

In this issue, we detail the work done to remove these images from sct-testing-large.

@plbenveniste
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The following script was written to solve this code/remove_nyu_subj.py. It does the following:

  • for each sub-nyuShepherd file, it checks if the file exists in ms-nyu. If not, it is copied to the right location (with the corresponding json file).
  • same for the derivative files. This was essential sice vertebral discs and spinal cord seg were not all in ms-myu

Then I removed the files from the csv file.

Ready for review and merge!

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